Variant report

Variant	rs73119811
Chromosome Location	chr20:40700846-40700847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1884035	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2223912	0.86[EUR][1000 genomes]
rs3084007	0.86[EUR][1000 genomes]
rs3787282	0.96[ASN][1000 genomes]
rs3827068	0.96[ASN][1000 genomes]
rs41278132	0.96[ASN][1000 genomes]
rs41278134	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41278136	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41278142	0.92[EUR][1000 genomes]
rs45500198	0.87[EUR][1000 genomes]
rs58841508	0.92[EUR][1000 genomes]
rs6016670	0.86[EUR][1000 genomes]
rs6016681	0.92[EUR][1000 genomes]
rs6016682	0.92[EUR][1000 genomes]
rs6029963	0.87[EUR][1000 genomes]
rs6029964	0.83[EUR][1000 genomes]
rs6029965	0.83[EUR][1000 genomes]
rs6029966	0.92[EUR][1000 genomes]
rs6102641	0.84[EUR][1000 genomes]
rs6513765	0.92[EUR][1000 genomes]
rs73113870	0.83[EUR][1000 genomes]
rs73113872	0.82[EUR][1000 genomes]
rs73115457	0.86[EUR][1000 genomes]
rs73115458	0.86[EUR][1000 genomes]
rs73115478	0.86[EUR][1000 genomes]
rs73115479	0.86[EUR][1000 genomes]
rs73115480	0.86[EUR][1000 genomes]
rs73117860	0.81[EUR][1000 genomes]
rs73117872	0.86[EUR][1000 genomes]
rs73117886	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73119803	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73119807	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73119815	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73119820	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73119823	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73119847	0.92[EUR][1000 genomes]
rs73119850	0.92[EUR][1000 genomes]
rs73129112	0.92[EUR][1000 genomes]
rs73129138	0.92[EUR][1000 genomes]
rs73129147	0.92[EUR][1000 genomes]
rs73129161	0.92[EUR][1000 genomes]
rs73129169	0.92[EUR][1000 genomes]
rs73129170	0.92[EUR][1000 genomes]
rs73129173	0.87[EUR][1000 genomes]
rs73129176	0.92[EUR][1000 genomes]
rs73129180	0.92[EUR][1000 genomes]
rs73129186	0.92[EUR][1000 genomes]
rs73129195	0.87[EUR][1000 genomes]
rs73129199	0.87[EUR][1000 genomes]
rs73131104	0.87[EUR][1000 genomes]
rs73131116	0.87[EUR][1000 genomes]
rs8124637	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3381	chr20:39925326-40765696	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv995175	chr20:40699252-40707470	Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40697000-40703400	Weak transcription	Fetal Lung	lung
2	chr20:40697200-40705800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr20:40699000-40702800	Weak transcription	Fetal Stomach	stomach
4	chr20:40699400-40701800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links