Variant report

Variant	rs73120876
Chromosome Location	chr2:235143156-235143157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11885494	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11886459	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58732877	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120873	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120878	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120885	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120887	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120891	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv584713	chr2:235092011-235236611	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:235139200-235144600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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