Variant report

Variant	rs73120885
Chromosome Location	chr2:235146246-235146247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11885494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11886459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58732877	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120860	0.85[AFR][1000 genomes]
rs73120873	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120876	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120878	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv584713	chr2:235092011-235236611	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:235145000-235148600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:235145200-235149400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:235145200-235156000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links