Variant report

Variant	rs7312225
Chromosome Location	chr12:60663620-60663621
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10747870	0.92[EUR][1000 genomes]
rs10784033	0.87[EUR][1000 genomes]
rs10877398	0.85[EUR][1000 genomes]
rs10877399	0.88[EUR][1000 genomes]
rs10877401	0.86[EUR][1000 genomes]
rs10877402	0.87[EUR][1000 genomes]
rs10877403	0.88[EUR][1000 genomes]
rs10877406	0.88[EUR][1000 genomes]
rs10877413	0.82[EUR][1000 genomes]
rs10877414	0.81[EUR][1000 genomes]
rs11173357	0.85[EUR][1000 genomes]
rs11173365	0.86[EUR][1000 genomes]
rs11173371	0.90[EUR][1000 genomes]
rs11173386	0.83[EUR][1000 genomes]
rs11173387	0.92[EUR][1000 genomes]
rs11173389	0.82[EUR][1000 genomes]
rs11173391	0.82[EUR][1000 genomes]
rs11173392	0.82[EUR][1000 genomes]
rs11173393	0.82[EUR][1000 genomes]
rs11173395	0.81[EUR][1000 genomes]
rs11173397	0.81[EUR][1000 genomes]
rs11173398	0.81[EUR][1000 genomes]
rs11561446	0.82[EUR][1000 genomes]
rs11561447	0.82[EUR][1000 genomes]
rs11836206	0.82[EUR][1000 genomes]
rs12228823	0.83[EUR][1000 genomes]
rs12817959	0.89[EUR][1000 genomes]
rs12830074	0.90[EUR][1000 genomes]
rs1304313	0.93[EUR][1000 genomes]
rs1319775	0.80[EUR][1000 genomes]
rs1354469	0.92[EUR][1000 genomes]
rs1389256	0.86[EUR][1000 genomes]
rs1493311	0.85[EUR][1000 genomes]
rs1493318	0.86[EUR][1000 genomes]
rs1504442	0.83[EUR][1000 genomes]
rs1504443	0.83[EUR][1000 genomes]
rs1504444	0.89[EUR][1000 genomes]
rs1587821	0.93[EUR][1000 genomes]
rs1910674	0.93[EUR][1000 genomes]
rs1995515	0.82[EUR][1000 genomes]
rs2134882	0.92[EUR][1000 genomes]
rs2202365	0.81[EUR][1000 genomes]
rs2221407	0.81[EUR][1000 genomes]
rs2363600	0.82[EUR][1000 genomes]
rs35713358	0.90[EUR][1000 genomes]
rs3920119	0.82[EUR][1000 genomes]
rs4254103	0.88[EUR][1000 genomes]
rs4347425	0.89[EUR][1000 genomes]
rs4366523	0.88[EUR][1000 genomes]
rs4406858	0.87[EUR][1000 genomes]
rs4758858	0.87[EUR][1000 genomes]
rs4758859	0.83[EUR][1000 genomes]
rs56240683	0.82[EUR][1000 genomes]
rs60691341	0.81[EUR][1000 genomes]
rs61487567	0.82[EUR][1000 genomes]
rs61923121	0.80[EUR][1000 genomes]
rs61923124	0.83[EUR][1000 genomes]
rs61923127	0.83[EUR][1000 genomes]
rs61923129	0.83[EUR][1000 genomes]
rs61923130	0.82[EUR][1000 genomes]
rs61923132	0.82[EUR][1000 genomes]
rs61923155	0.82[EUR][1000 genomes]
rs6581310	0.81[EUR][1000 genomes]
rs7134267	0.81[EUR][1000 genomes]
rs7136435	0.91[EUR][1000 genomes]
rs7138854	0.87[EUR][1000 genomes]
rs7295183	0.83[EUR][1000 genomes]
rs7297548	0.91[EUR][1000 genomes]
rs7313364	0.91[EUR][1000 genomes]
rs7952971	0.81[EUR][1000 genomes]
rs7953857	0.82[EUR][1000 genomes]
rs7957295	0.80[EUR][1000 genomes]
rs7961221	0.91[EUR][1000 genomes]
rs7961816	0.83[EUR][1000 genomes]
rs7973156	0.82[EUR][1000 genomes]
rs924836	0.81[EUR][1000 genomes]
rs958543	0.94[EUR][1000 genomes]
rs9634280	0.83[EUR][1000 genomes]
rs9634281	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1054287	chr12:60601870-60861866	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832431	chr12:60626292-60809233	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3402029	chr12:60662510-60665058	Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60661800-60664600	Weak transcription	A549	lung
2	chr12:60663400-60663800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:60663400-60664200	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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