Variant report

Variant	rs924836
Chromosome Location	chr12:60705297-60705298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs1021887	0.91[EUR][1000 genomes]
rs10747870	0.86[EUR][1000 genomes]
rs10784046	0.91[EUR][1000 genomes]
rs10877401	0.82[EUR][1000 genomes]
rs10877402	0.82[EUR][1000 genomes]
rs10877403	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs10877406	0.84[EUR][1000 genomes]
rs10877412	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10877413	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10877414	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10877422	0.86[EUR][1000 genomes]
rs11173357	0.81[EUR][1000 genomes]
rs11173365	0.81[EUR][1000 genomes]
rs11173371	0.82[EUR][1000 genomes]
rs11173387	0.87[EUR][1000 genomes]
rs11173389	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11173391	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11173392	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11173393	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11173395	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11173396	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11173397	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11173398	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11173405	0.84[EUR][1000 genomes]
rs11173414	0.80[EUR][1000 genomes]
rs11173418	0.86[EUR][1000 genomes]
rs1125188	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11561446	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11561447	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11836206	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12228889	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs12230599	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12231371	0.81[CEU][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes]
rs12231943	0.85[EUR][1000 genomes]
rs12580142	0.80[EUR][1000 genomes]
rs12580151	0.80[EUR][1000 genomes]
rs12817959	0.82[EUR][1000 genomes]
rs12830074	0.82[EUR][1000 genomes]
rs1304313	0.87[EUR][1000 genomes]
rs1319633	0.86[EUR][1000 genomes]
rs1354469	0.88[EUR][1000 genomes]
rs1394328	0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs1394330	0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs1493311	0.81[EUR][1000 genomes]
rs1504444	0.85[EUR][1000 genomes]
rs1504459	0.86[EUR][1000 genomes]
rs1504460	0.80[EUR][1000 genomes]
rs1504462	0.86[EUR][1000 genomes]
rs1504463	0.86[EUR][1000 genomes]
rs1504464	0.86[EUR][1000 genomes]
rs1532811	0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs1566847	0.85[EUR][1000 genomes]
rs1580916	0.81[EUR][1000 genomes]
rs1587821	0.87[EUR][1000 genomes]
rs1604865	0.81[EUR][1000 genomes]
rs1604866	0.91[EUR][1000 genomes]
rs1604867	0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs1604868	0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs1604869	0.90[JPT][hapmap];0.80[EUR][1000 genomes]
rs17606011	0.80[EUR][1000 genomes]
rs17606266	0.80[EUR][1000 genomes]
rs17669416	0.80[EUR][1000 genomes]
rs1827638	0.81[EUR][1000 genomes]
rs1875860	0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs1910674	0.85[EUR][1000 genomes]
rs1995515	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2102257	0.81[EUR][1000 genomes]
rs2102258	0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs2134882	0.88[EUR][1000 genomes]
rs2202365	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2221407	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2262939	0.81[EUR][1000 genomes]
rs2363600	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2655842	0.81[EUR][1000 genomes]
rs2655843	0.81[EUR][1000 genomes]
rs2655846	0.80[EUR][1000 genomes]
rs2655848	0.81[EUR][1000 genomes]
rs2655856	0.80[EUR][1000 genomes]
rs2655893	0.81[EUR][1000 genomes]
rs2731487	0.81[EUR][1000 genomes]
rs2731488	0.81[EUR][1000 genomes]
rs2731491	0.81[EUR][1000 genomes]
rs2731492	0.81[EUR][1000 genomes]
rs35713358	0.86[EUR][1000 genomes]
rs3901470	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3920119	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4254103	0.84[EUR][1000 genomes]
rs4347425	0.81[EUR][1000 genomes]
rs4366523	0.84[EUR][1000 genomes]
rs4406858	0.82[EUR][1000 genomes]
rs4583008	0.85[EUR][1000 genomes]
rs4758863	0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs56240683	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60691341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60798845	0.80[EUR][1000 genomes]
rs61923155	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61923156	0.84[EUR][1000 genomes]
rs61923157	0.84[EUR][1000 genomes]
rs61925560	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6581310	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7136435	0.83[EUR][1000 genomes]
rs7136835	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7136994	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7295183	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7297548	0.89[EUR][1000 genomes]
rs7305978	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7306226	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7312225	0.81[EUR][1000 genomes]
rs7313364	0.89[EUR][1000 genomes]
rs7952971	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7953857	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7957295	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7960292	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7960303	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7960487	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7961221	0.83[EUR][1000 genomes]
rs7961791	0.85[EUR][1000 genomes]
rs7961816	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7971161	0.85[EUR][1000 genomes]
rs7972668	0.80[EUR][1000 genomes]
rs7973156	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7975549	0.92[EUR][1000 genomes]
rs905722	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs924835	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs958543	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1054287	chr12:60601870-60861866	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832431	chr12:60626292-60809233	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1047466	chr12:60702221-61521156	Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60701200-60706200	Enhancers	NHEK	skin
2	chr12:60701600-60706200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr12:60701800-60706400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:60705000-60705800	Weak transcription	HMEC	breast
5	chr12:60705200-60705400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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