Variant report
| Variant | rs73126781 |
|---|---|
| Chromosome Location | chr5:75038221-75038222 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11748475 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11749985 | 0.88[ASN][1000 genomes] |
| rs11950110 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs16872770 | 0.88[ASN][1000 genomes] |
| rs16872776 | 0.88[ASN][1000 genomes] |
| rs17563512 | 0.88[ASN][1000 genomes] |
| rs17564079 | 0.88[ASN][1000 genomes] |
| rs17648910 | 0.88[ASN][1000 genomes] |
| rs17649030 | 0.88[ASN][1000 genomes] |
| rs17649109 | 0.88[ASN][1000 genomes] |
| rs34078310 | 0.88[ASN][1000 genomes] |
| rs35130836 | 0.88[ASN][1000 genomes] |
| rs58212453 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs58578970 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs59636050 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6894099 | 0.88[ASN][1000 genomes] |
| rs73124778 | 0.88[ASN][1000 genomes] |
| rs73124801 | 0.88[ASN][1000 genomes] |
| rs73126706 | 0.88[ASN][1000 genomes] |
| rs73126731 | 0.88[ASN][1000 genomes] |
| rs73126735 | 0.88[ASN][1000 genomes] |
| rs73126742 | 0.88[ASN][1000 genomes] |
| rs73126745 | 0.88[ASN][1000 genomes] |
| rs73126747 | 0.88[ASN][1000 genomes] |
| rs73126758 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73126775 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73126786 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73128519 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7702134 | 0.88[ASN][1000 genomes] |
| rs7734921 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1027368 | chr5:74759999-75663712 | Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
| 2 | nsv518475 | chr5:74863041-75411804 | Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 3 | esv1850196 | chr5:74890618-75138443 | Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | nsv830353 | chr5:74961520-75152609 | Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:75038000-75038600 | Enhancers | Fetal Thymus | thymus |
