Variant report

Variant	rs58578970
Chromosome Location	chr5:75024999-75025000
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11748475	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11749985	1.00[ASN][1000 genomes]
rs11750595	0.88[ASN][1000 genomes]
rs16872770	1.00[ASN][1000 genomes]
rs16872776	1.00[ASN][1000 genomes]
rs17563395	0.88[ASN][1000 genomes]
rs17563512	1.00[ASN][1000 genomes]
rs17564079	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17648910	1.00[ASN][1000 genomes]
rs17649030	1.00[ASN][1000 genomes]
rs17649109	1.00[ASN][1000 genomes]
rs28493912	0.84[ASN][1000 genomes]
rs34078310	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35130836	1.00[ASN][1000 genomes]
rs58212453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6894099	1.00[ASN][1000 genomes]
rs73124778	1.00[ASN][1000 genomes]
rs73124801	1.00[ASN][1000 genomes]
rs73126706	1.00[ASN][1000 genomes]
rs73126731	1.00[ASN][1000 genomes]
rs73126735	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73126742	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73126745	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73126747	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73126758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73126775	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73126781	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73126786	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7702134	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7715739	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv518475	chr5:74863041-75411804	Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv1850196	chr5:74890618-75138443	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv830353	chr5:74961520-75152609	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75022200-75025000	Weak transcription	Brain Angular Gyrus	brain
2	chr5:75024200-75025000	Enhancers	Brain Cingulate Gyrus	brain
3	chr5:75024200-75025200	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr5:75024200-75026200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:75024400-75026200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr5:75024600-75025000	Enhancers	Stomach Mucosa	stomach
7	chr5:75024600-75025400	Enhancers	Brain Hippocampus Middle	brain
8	chr5:75024600-75025800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:75024800-75025200	Flanking Active TSS	Brain Substantia Nigra	brain
10	chr5:75024800-75025200	Enhancers	Gastric	stomach
11	chr5:75024800-75025600	Enhancers	Duodenum Mucosa	Duodenum
12	chr5:75024800-75025600	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr5:75024800-75026200	Enhancers	Pancreas	Pancrea

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