Variant report

Variant	rs73132546
Chromosome Location	chr3:88180661-88180662
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:88168225..88170439-chr3:88180081..88182166,2	K562	blood:
2	chr3:88178407..88180770-chr3:88182763..88185697,2	MCF-7	breast:
3	chr3:88171939..88174648-chr3:88180004..88182609,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1006896	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10858	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11925988	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13317202	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2735556	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2735559	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4858934	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858939	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4858940	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4859003	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55883959	0.81[ASN][1000 genomes]
rs55928667	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55932154	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56185750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56211058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56246133	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6419868	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6419869	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6551276	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551281	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551287	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551295	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73132512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73146085	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73146095	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73146099	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73148006	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7430022	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7432826	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7610494	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7620576	0.86[EUR][1000 genomes]
rs7624215	0.88[EUR][1000 genomes]
rs7650068	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9284814	0.85[EUR][1000 genomes]
rs9826925	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88128800-88198200	Weak transcription	Esophagus	oesophagus
2	chr3:88134800-88188200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:88135600-88196800	Weak transcription	Hela-S3	cervix
4	chr3:88137400-88188200	Weak transcription	Fetal Kidney	kidney
5	chr3:88138200-88180800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:88141000-88197800	Weak transcription	Thymus	Thymus
7	chr3:88141200-88182200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:88145200-88191000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:88145200-88198200	Weak transcription	Aorta	Aorta
10	chr3:88148000-88196400	Weak transcription	Fetal Intestine Small	intestine
11	chr3:88150000-88184600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:88152000-88197000	Weak transcription	Lung	lung
13	chr3:88154800-88183800	Weak transcription	HUVEC	blood vessel
14	chr3:88155400-88188000	Weak transcription	Psoas Muscle	Psoas
15	chr3:88155400-88188200	Weak transcription	Right Ventricle	heart
16	chr3:88155800-88189200	Weak transcription	Colonic Mucosa	Colon
17	chr3:88156000-88189000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:88159600-88180800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:88159600-88197800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:88161000-88197800	Weak transcription	Fetal Stomach	stomach
21	chr3:88161800-88184000	Weak transcription	NH-A	brain
22	chr3:88162200-88188000	Weak transcription	NHLF	lung
23	chr3:88162800-88182000	Weak transcription	A549	lung
24	chr3:88162800-88187800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:88162800-88191600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr3:88162800-88197200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr3:88162800-88198000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:88163000-88182000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr3:88163600-88197800	Weak transcription	Gastric	stomach
30	chr3:88163800-88188400	Weak transcription	Fetal Brain Female	brain
31	chr3:88164200-88188200	Weak transcription	Left Ventricle	heart
32	chr3:88164400-88182400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr3:88164400-88184000	Weak transcription	HMEC	breast
34	chr3:88164600-88181000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr3:88164600-88181000	Weak transcription	HepG2	liver
36	chr3:88165400-88184200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr3:88165600-88185800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:88165600-88186800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr3:88165600-88188000	Weak transcription	Fetal Muscle Trunk	muscle
40	chr3:88166000-88188400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr3:88166000-88190800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr3:88166200-88188200	Weak transcription	Fetal Brain Male	brain
43	chr3:88167400-88180800	Weak transcription	Brain Angular Gyrus	brain
44	chr3:88167600-88188400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr3:88167600-88197800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr3:88167800-88180800	Weak transcription	Fetal Intestine Large	intestine
47	chr3:88167800-88185800	Weak transcription	Fetal Muscle Leg	muscle
48	chr3:88168000-88180800	Weak transcription	NHDF-Ad	bronchial
49	chr3:88168000-88182200	Weak transcription	GM12878-XiMat	blood
50	chr3:88168000-88197800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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