Variant report

Variant	rs7620576
Chromosome Location	chr3:88247927-88247928
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11925988	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13317202	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4858934	0.85[EUR][1000 genomes]
rs4858939	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4858940	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4859003	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55928667	0.84[EUR][1000 genomes]
rs55932154	0.86[EUR][1000 genomes]
rs56185750	0.86[EUR][1000 genomes]
rs56211058	0.86[EUR][1000 genomes]
rs6419868	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6419869	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6551276	0.89[EUR][1000 genomes]
rs6551281	0.89[EUR][1000 genomes]
rs6551287	0.91[EUR][1000 genomes]
rs6551295	0.95[EUR][1000 genomes]
rs73132512	0.86[EUR][1000 genomes]
rs73132546	0.86[EUR][1000 genomes]
rs7430022	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7432826	0.89[EUR][1000 genomes]
rs7610494	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7624215	0.95[EUR][1000 genomes]
rs7650068	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9284814	0.91[EUR][1000 genomes]
rs9826925	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7620576	CGGBP1///LOC728397	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88247600-88253000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:88247600-88253000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:88247600-88253000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:88247600-88253000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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