Variant report

Variant	rs73133259
Chromosome Location	chr5:92832143-92832144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6865340	1.00[AFR][1000 genomes]
rs73133241	1.00[AFR][1000 genomes]
rs7728368	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830402	chr5:92703901-92847345	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92815200-92859200	Weak transcription	Fetal Brain Male	brain
2	chr5:92816200-92839200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:92823200-92837800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:92823600-92839200	Weak transcription	HSMMtube	muscle
5	chr5:92824600-92836200	Weak transcription	Fetal Brain Female	brain
6	chr5:92825200-92839000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:92826600-92839200	Weak transcription	HSMM	muscle
8	chr5:92826800-92832400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:92827000-92832800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:92827000-92832800	Weak transcription	NH-A	brain
11	chr5:92827000-92838200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:92827000-92839200	Weak transcription	NHLF	lung
13	chr5:92827000-92858200	Weak transcription	Ovary	ovary
14	chr5:92827200-92835800	Weak transcription	Brain Germinal Matrix	brain
15	chr5:92827200-92839200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr5:92827200-92851600	Weak transcription	Fetal Kidney	kidney
17	chr5:92827200-92858200	Weak transcription	Fetal Stomach	stomach
18	chr5:92827600-92832400	Weak transcription	Fetal Lung	lung
19	chr5:92827600-92838400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr5:92827600-92838800	Weak transcription	Osteobl	bone
21	chr5:92827600-92839200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr5:92830600-92832600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr5:92830800-92833800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:92832000-92832200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr5:92832000-92833000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:92832000-92833400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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