Variant report

Variant	rs73137879
Chromosome Location	chr3:85617711-85617712
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:85616525..85619382-chr3:85621735..85623491,2	K562	blood:

Extended variants
information (count: 222 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:201)

rs_ID	r²[population]
rs10511075	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10511083	0.81[EUR][1000 genomes]
rs10865610	0.89[EUR][1000 genomes]
rs10865611	0.85[EUR][1000 genomes]
rs11127898	0.83[EUR][1000 genomes]
rs11127899	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11127900	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11919099	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12054328	0.85[EUR][1000 genomes]
rs12491722	0.81[EUR][1000 genomes]
rs12494446	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12629607	0.81[EUR][1000 genomes]
rs12638040	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12639564	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1375550	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1375554	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1375555	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1375557	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1375558	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1375560	0.81[EUR][1000 genomes]
rs1375565	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1375566	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1449378	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1449379	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1449380	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1449381	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1449382	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1449386	0.89[EUR][1000 genomes]
rs1449401	0.85[EUR][1000 genomes]
rs1449402	0.85[EUR][1000 genomes]
rs1463203	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1463204	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1463205	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1463206	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1463207	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1463208	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1470635	0.81[EUR][1000 genomes]
rs1470636	0.81[EUR][1000 genomes]
rs1530738	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1530739	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1530740	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1551042	0.83[EUR][1000 genomes]
rs1551045	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1551046	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1551047	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1551048	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1597315	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17023032	0.88[EUR][1000 genomes]
rs17455991	0.81[EUR][1000 genomes]
rs17456263	0.81[EUR][1000 genomes]
rs17457050	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17457189	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17457217	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17457377	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17457426	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17457454	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17457642	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17457669	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17459563	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17459906	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17460541	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17460701	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17515586	0.81[EUR][1000 genomes]
rs17516470	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17516504	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17516546	0.81[EUR][1000 genomes]
rs17516580	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17516683	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17516857	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17517080	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17517121	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17517142	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17517238	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17517273	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17519241	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs17519262	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs17519948	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1900914	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1900916	0.85[EUR][1000 genomes]
rs1900918	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1947221	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1972994	0.82[EUR][1000 genomes]
rs1992967	0.81[EUR][1000 genomes]
rs2029130	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2044723	0.85[EUR][1000 genomes]
rs2044725	0.84[EUR][1000 genomes]
rs2122233	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2122234	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2122235	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2167043	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2167044	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2167045	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2167046	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2167047	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2326318	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2326319	0.85[EUR][1000 genomes]
rs34305569	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34467301	0.81[AFR][1000 genomes]
rs34495106	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35438712	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35701422	0.81[EUR][1000 genomes]
rs35738543	0.81[EUR][1000 genomes]
rs4502590	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4508796	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4603966	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4856271	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4856588	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4856589	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4856590	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4856592	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4856596	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4856598	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs55677942	0.86[AFR][1000 genomes]
rs55801641	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs56779213	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs57276248	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57756567	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs58796643	0.83[EUR][1000 genomes]
rs58828944	0.81[EUR][1000 genomes]
rs58889493	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58919842	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs59073108	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs59211082	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59225869	0.81[EUR][1000 genomes]
rs59491876	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs59770976	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs59825726	0.81[EUR][1000 genomes]
rs59835020	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59967234	0.81[EUR][1000 genomes]
rs60541362	0.85[EUR][1000 genomes]
rs60597959	0.80[EUR][1000 genomes]
rs61316596	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61586601	0.85[EUR][1000 genomes]
rs62250467	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62250468	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62250472	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62250491	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62250492	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62250496	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62250500	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62250501	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62250502	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62250503	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62250537	0.84[EUR][1000 genomes]
rs62250540	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62250758	0.80[EUR][1000 genomes]
rs62252462	0.81[EUR][1000 genomes]
rs62252463	0.81[EUR][1000 genomes]
rs62252464	0.80[EUR][1000 genomes]
rs62252465	0.80[EUR][1000 genomes]
rs62252466	0.81[EUR][1000 genomes]
rs62252467	0.80[EUR][1000 genomes]
rs62252512	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62252513	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62252516	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62252518	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62252519	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62253961	0.80[EUR][1000 genomes]
rs62253964	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62253965	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62263910	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62263912	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6549041	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6549042	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6549043	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6549044	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66625173	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs66781790	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs66922686	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs67544605	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6762535	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6762733	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6765881	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6765991	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6766493	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6766690	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6772956	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6777456	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6777458	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6779501	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6780346	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6782190	0.85[EUR][1000 genomes]
rs6788098	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6790090	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs67904150	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6790699	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6794866	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67955391	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs68001049	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6801823	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6804626	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6807666	0.84[EUR][1000 genomes]
rs72615727	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72615728	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7427346	0.81[EUR][1000 genomes]
rs7616458	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7617323	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7617356	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7620313	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7634761	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs956281	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
5	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv998829	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv536622	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv526621	chr3:85470642-85667683	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1009927	chr3:85497666-85669155	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1002139	chr3:85534559-85630146	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1006433	chr3:85535783-85631667	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv590906	chr3:85539816-85626054	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv527642	chr3:85551353-85619451	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1013950	chr3:85561009-85631527	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv536628	chr3:85561009-85631527	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1006141	chr3:85577197-85619079	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1006360	chr3:85597755-85683081	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv536629	chr3:85597755-85683081	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1011376	chr3:85599411-85657771	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85616400-85621400	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links