Variant report

Variant	rs62250501
Chromosome Location	chr3:85634216-85634217
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 278 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:263)

rs_ID	r²[population]
rs1014796	0.91[ASN][1000 genomes]
rs10433499	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10433525	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511075	0.92[EUR][1000 genomes]
rs10511083	0.91[EUR][1000 genomes]
rs10511085	0.85[EUR][1000 genomes]
rs10865610	0.98[EUR][1000 genomes]
rs10865611	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127893	0.84[EUR][1000 genomes]
rs11127897	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127898	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127899	0.98[EUR][1000 genomes]
rs11127900	0.97[EUR][1000 genomes]
rs1155666	0.83[EUR][1000 genomes]
rs11919099	0.98[EUR][1000 genomes]
rs12054328	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12491722	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12494446	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12629607	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637791	0.84[EUR][1000 genomes]
rs12638040	0.80[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12638798	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639564	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368750	0.84[EUR][1000 genomes]
rs1375550	0.91[EUR][1000 genomes]
rs1375554	0.98[EUR][1000 genomes]
rs1375555	0.96[EUR][1000 genomes]
rs1375556	0.91[ASN][1000 genomes]
rs1375557	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1375558	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1375560	0.91[EUR][1000 genomes]
rs1375565	0.98[EUR][1000 genomes]
rs1375566	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433708	0.82[EUR][1000 genomes]
rs1433714	0.83[EUR][1000 genomes]
rs1449378	0.98[EUR][1000 genomes]
rs1449379	0.98[EUR][1000 genomes]
rs1449380	0.98[EUR][1000 genomes]
rs1449381	0.98[EUR][1000 genomes]
rs1449382	0.98[EUR][1000 genomes]
rs1449386	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449391	0.88[EUR][1000 genomes]
rs1449401	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449402	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449403	0.91[ASN][1000 genomes]
rs1463203	0.98[EUR][1000 genomes]
rs1463204	0.98[EUR][1000 genomes]
rs1463205	0.98[EUR][1000 genomes]
rs1463206	0.98[EUR][1000 genomes]
rs1463207	0.98[EUR][1000 genomes]
rs1463208	0.98[EUR][1000 genomes]
rs1470635	0.91[EUR][1000 genomes]
rs1470636	0.89[EUR][1000 genomes]
rs1530738	0.98[EUR][1000 genomes]
rs1530739	0.98[EUR][1000 genomes]
rs1530740	0.98[EUR][1000 genomes]
rs1542248	0.85[EUR][1000 genomes]
rs1551042	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551043	0.87[EUR][1000 genomes]
rs1551044	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551045	0.98[EUR][1000 genomes]
rs1551046	0.97[EUR][1000 genomes]
rs1551047	0.98[EUR][1000 genomes]
rs1551048	0.98[EUR][1000 genomes]
rs1597315	0.97[EUR][1000 genomes]
rs17023032	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455991	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17456263	0.91[EUR][1000 genomes]
rs17457050	0.92[EUR][1000 genomes]
rs17457189	0.93[EUR][1000 genomes]
rs17457217	0.92[EUR][1000 genomes]
rs17457377	0.94[EUR][1000 genomes]
rs17457426	0.94[EUR][1000 genomes]
rs17457454	0.94[EUR][1000 genomes]
rs17457642	0.97[EUR][1000 genomes]
rs17457669	0.97[EUR][1000 genomes]
rs17459563	0.97[EUR][1000 genomes]
rs17459906	0.98[EUR][1000 genomes]
rs17460541	0.98[EUR][1000 genomes]
rs17460701	0.98[EUR][1000 genomes]
rs17515196	0.85[EUR][1000 genomes]
rs17515586	0.91[EUR][1000 genomes]
rs17516470	0.92[EUR][1000 genomes]
rs17516504	0.92[EUR][1000 genomes]
rs17516546	0.90[EUR][1000 genomes]
rs17516580	0.91[EUR][1000 genomes]
rs17516683	0.91[EUR][1000 genomes]
rs17516857	0.94[EUR][1000 genomes]
rs17517080	0.94[EUR][1000 genomes]
rs17517121	0.97[EUR][1000 genomes]
rs17517142	0.97[EUR][1000 genomes]
rs17517238	0.97[EUR][1000 genomes]
rs17517273	0.96[EUR][1000 genomes]
rs17519241	0.98[EUR][1000 genomes]
rs17519262	0.98[EUR][1000 genomes]
rs17519948	0.98[EUR][1000 genomes]
rs1813696	0.84[EUR][1000 genomes]
rs1865250	0.81[EUR][1000 genomes]
rs1868533	0.91[ASN][1000 genomes]
rs1900914	0.98[EUR][1000 genomes]
rs1900916	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1900918	0.97[EUR][1000 genomes]
rs1947221	0.98[EUR][1000 genomes]
rs1972994	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1992967	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2029130	0.98[EUR][1000 genomes]
rs2044723	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044725	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2069123	0.84[EUR][1000 genomes]
rs2077839	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2117153	0.83[EUR][1000 genomes]
rs2122233	0.98[EUR][1000 genomes]
rs2122234	0.98[EUR][1000 genomes]
rs2122235	0.93[EUR][1000 genomes]
rs2167043	0.98[EUR][1000 genomes]
rs2167044	0.98[EUR][1000 genomes]
rs2167045	0.98[EUR][1000 genomes]
rs2167046	0.93[EUR][1000 genomes]
rs2167047	0.93[EUR][1000 genomes]
rs2326315	0.85[ASN][1000 genomes]
rs2326318	0.97[EUR][1000 genomes]
rs2326319	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2326381	0.91[ASN][1000 genomes]
rs2875907	0.83[EUR][1000 genomes]
rs34305569	0.92[EUR][1000 genomes]
rs34467301	0.87[EUR][1000 genomes]
rs34495106	0.98[EUR][1000 genomes]
rs35438712	0.93[EUR][1000 genomes]
rs35701422	0.90[EUR][1000 genomes]
rs35738543	0.91[EUR][1000 genomes]
rs35827242	0.82[EUR][1000 genomes]
rs4502590	0.98[EUR][1000 genomes]
rs4508796	0.80[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4603966	0.98[EUR][1000 genomes]
rs4637303	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4856271	0.94[EUR][1000 genomes]
rs4856272	0.91[ASN][1000 genomes]
rs4856278	0.97[ASN][1000 genomes]
rs4856573	0.83[EUR][1000 genomes]
rs4856588	0.96[EUR][1000 genomes]
rs4856589	0.97[EUR][1000 genomes]
rs4856590	0.96[EUR][1000 genomes]
rs4856592	0.98[EUR][1000 genomes]
rs4856596	0.80[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4856598	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55753638	0.91[ASN][1000 genomes]
rs55801641	0.91[EUR][1000 genomes]
rs56779213	0.92[EUR][1000 genomes]
rs56816351	0.83[EUR][1000 genomes]
rs57276248	0.98[EUR][1000 genomes]
rs57630146	0.82[EUR][1000 genomes]
rs57756567	0.92[EUR][1000 genomes]
rs58796643	0.90[EUR][1000 genomes]
rs58828944	0.91[EUR][1000 genomes]
rs58889493	0.98[EUR][1000 genomes]
rs58919842	0.92[EUR][1000 genomes]
rs59073108	0.98[EUR][1000 genomes]
rs59211082	0.98[EUR][1000 genomes]
rs59225869	0.91[EUR][1000 genomes]
rs59491876	0.92[EUR][1000 genomes]
rs59770976	0.92[EUR][1000 genomes]
rs59825726	0.91[EUR][1000 genomes]
rs59835020	0.98[EUR][1000 genomes]
rs59967234	0.91[EUR][1000 genomes]
rs60541362	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60597959	0.90[EUR][1000 genomes]
rs61316596	0.98[EUR][1000 genomes]
rs61586601	0.94[EUR][1000 genomes]
rs62250467	0.97[EUR][1000 genomes]
rs62250468	0.98[EUR][1000 genomes]
rs62250472	0.98[EUR][1000 genomes]
rs62250491	0.98[EUR][1000 genomes]
rs62250492	0.98[EUR][1000 genomes]
rs62250496	0.97[EUR][1000 genomes]
rs62250500	0.80[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs62250502	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs62250503	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs62250537	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62250540	0.97[EUR][1000 genomes]
rs62250711	0.83[EUR][1000 genomes]
rs62250712	0.82[EUR][1000 genomes]
rs62250713	0.80[EUR][1000 genomes]
rs62250714	0.84[EUR][1000 genomes]
rs62250715	0.84[EUR][1000 genomes]
rs62250719	0.84[EUR][1000 genomes]
rs62250750	0.88[EUR][1000 genomes]
rs62250754	0.88[EUR][1000 genomes]
rs62250758	0.89[EUR][1000 genomes]
rs62252462	0.91[EUR][1000 genomes]
rs62252463	0.91[EUR][1000 genomes]
rs62252464	0.89[EUR][1000 genomes]
rs62252465	0.89[EUR][1000 genomes]
rs62252466	0.91[EUR][1000 genomes]
rs62252467	0.89[EUR][1000 genomes]
rs62252512	0.92[EUR][1000 genomes]
rs62252513	0.94[EUR][1000 genomes]
rs62252516	0.94[EUR][1000 genomes]
rs62252517	0.91[ASN][1000 genomes]
rs62252518	0.94[EUR][1000 genomes]
rs62252519	0.94[EUR][1000 genomes]
rs62253961	0.90[EUR][1000 genomes]
rs62253964	0.98[EUR][1000 genomes]
rs62253965	0.98[EUR][1000 genomes]
rs62263910	0.97[EUR][1000 genomes]
rs62263912	0.98[EUR][1000 genomes]
rs6549030	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6549031	0.91[ASN][1000 genomes]
rs6549041	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6549042	0.85[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6549043	0.85[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6549044	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs66625173	0.91[EUR][1000 genomes]
rs66781790	0.90[EUR][1000 genomes]
rs66922686	0.97[EUR][1000 genomes]
rs67336646	0.85[EUR][1000 genomes]
rs67544605	0.92[EUR][1000 genomes]
rs6762267	0.83[EUR][1000 genomes]
rs6762535	0.80[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6762733	0.80[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6765881	0.98[EUR][1000 genomes]
rs6765991	0.98[EUR][1000 genomes]
rs6766493	0.94[EUR][1000 genomes]
rs6766690	0.80[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6772956	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6774985	0.83[EUR][1000 genomes]
rs6777456	0.96[EUR][1000 genomes]
rs6777458	0.96[EUR][1000 genomes]
rs6778223	0.91[ASN][1000 genomes]
rs6779501	0.94[EUR][1000 genomes]
rs6780346	0.91[EUR][1000 genomes]
rs6782190	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788098	0.98[EUR][1000 genomes]
rs6790090	0.97[EUR][1000 genomes]
rs67904150	0.80[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6790699	0.97[EUR][1000 genomes]
rs6794866	0.98[EUR][1000 genomes]
rs67955391	0.80[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs68001049	0.80[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6801823	0.98[EUR][1000 genomes]
rs6804626	0.92[EUR][1000 genomes]
rs6804845	0.89[EUR][1000 genomes]
rs6807461	0.91[ASN][1000 genomes]
rs6807666	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72615727	0.96[EUR][1000 genomes]
rs72615728	0.96[EUR][1000 genomes]
rs726610	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137879	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7427346	0.91[EUR][1000 genomes]
rs7609594	0.82[EUR][1000 genomes]
rs7614148	0.85[EUR][1000 genomes]
rs7614552	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7616458	0.98[EUR][1000 genomes]
rs7617323	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617356	0.98[EUR][1000 genomes]
rs7618124	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7618429	0.88[EUR][1000 genomes]
rs7620313	0.97[EUR][1000 genomes]
rs7621381	0.85[EUR][1000 genomes]
rs7623474	0.91[ASN][1000 genomes]
rs7623947	0.91[ASN][1000 genomes]
rs7634761	0.97[EUR][1000 genomes]
rs7636243	0.80[EUR][1000 genomes]
rs956281	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv998829	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv536622	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv526621	chr3:85470642-85667683	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1009927	chr3:85497666-85669155	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1006360	chr3:85597755-85683081	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv536629	chr3:85597755-85683081	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1011376	chr3:85599411-85657771	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv590907	chr3:85619451-85694987	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv877101	chr3:85619451-85710336	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85633800-85634400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:85634000-85634400	Enhancers	HSMMtube	muscle
3	chr3:85634200-85634400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:85634200-85634400	Enhancers	Aorta	Aorta
5	chr3:85634200-85634400	Enhancers	Brain Anterior Caudate	brain
6	chr3:85634200-85634400	Enhancers	HSMM	muscle
7	chr3:85634200-85634400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr3:85634200-85636200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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