Variant report

Variant	rs4856278
Chromosome Location	chr3:85648649-85648650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1014796	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs1030720	1.00[CHB][hapmap]
rs10433499	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs10433525	0.97[ASN][1000 genomes]
rs10511078	1.00[CHB][hapmap]
rs10865609	1.00[CHB][hapmap]
rs10865611	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs11127897	0.97[ASN][1000 genomes]
rs11127898	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs12054328	0.97[ASN][1000 genomes]
rs12487446	1.00[CHB][hapmap]
rs12491722	0.94[ASN][1000 genomes]
rs12492753	1.00[CHB][hapmap]
rs12494446	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs12629607	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs12638798	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs12639001	1.00[CHB][hapmap]
rs12639564	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs1375556	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1375566	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs1433710	1.00[CHB][hapmap]
rs1449386	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs1449401	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs1449402	0.97[ASN][1000 genomes]
rs1449403	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs1465716	1.00[CHB][hapmap]
rs1551042	0.97[ASN][1000 genomes]
rs1551044	0.97[ASN][1000 genomes]
rs17023019	1.00[CHB][hapmap]
rs17023032	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs17455991	0.97[ASN][1000 genomes]
rs1868533	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1900916	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs1972994	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1992967	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs2017293	1.00[CHB][hapmap]
rs2029134	1.00[CHB][hapmap]
rs2044723	0.97[ASN][1000 genomes]
rs2044725	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2077839	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs2167043	1.00[CHB][hapmap]
rs2326315	0.88[ASN][1000 genomes]
rs2326319	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs2326381	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4637303	0.97[ASN][1000 genomes]
rs4856272	0.94[ASN][1000 genomes]
rs4856274	1.00[CHB][hapmap]
rs4856582	1.00[CHB][hapmap]
rs4856584	1.00[CHB][hapmap]
rs4856598	0.97[ASN][1000 genomes]
rs55753638	0.94[ASN][1000 genomes]
rs60541362	0.97[ASN][1000 genomes]
rs62250501	0.97[ASN][1000 genomes]
rs62250537	0.97[ASN][1000 genomes]
rs62252517	0.94[ASN][1000 genomes]
rs6549030	0.97[ASN][1000 genomes]
rs6549031	0.94[ASN][1000 genomes]
rs6778223	1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6781515	1.00[CHB][hapmap]
rs6782190	0.97[ASN][1000 genomes]
rs6807461	0.94[ASN][1000 genomes]
rs6807666	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs6810225	1.00[CHB][hapmap]
rs726610	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs7614552	0.97[ASN][1000 genomes]
rs7617323	0.97[ASN][1000 genomes]
rs7618124	0.92[ASN][1000 genomes]
rs7618494	1.00[CHB][hapmap]
rs7623474	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs7623947	1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7640828	1.00[CHB][hapmap]
rs7647981	1.00[CHB][hapmap]
rs7651113	1.00[CHB][hapmap]
rs7652808	1.00[CHB][hapmap]
rs892365	1.00[CHB][hapmap]
rs9309978	1.00[CHB][hapmap]
rs9824071	1.00[CHB][hapmap]
rs9825345	1.00[CHB][hapmap]
rs9846153	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv526621	chr3:85470642-85667683	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1009927	chr3:85497666-85669155	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1006360	chr3:85597755-85683081	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv536629	chr3:85597755-85683081	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1011376	chr3:85599411-85657771	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv590907	chr3:85619451-85694987	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv877101	chr3:85619451-85710336	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv877102	chr3:85639455-85690143	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv877103	chr3:85639455-85702868	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv877104	chr3:85646426-85737646	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85644000-85652200	Weak transcription	Fetal Brain Male	brain
2	chr3:85648400-85648800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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