Variant report

Variant	rs73139307
Chromosome Location	chr5:93223678-93223679
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:93211648..93213663-chr5:93223328..93224847,2	K562	blood:
2	chr5:93222617..93225067-chr5:93227445..93229131,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs59459894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73135337	1.00[AMR][1000 genomes]
rs73135340	1.00[AMR][1000 genomes]
rs73135341	1.00[AMR][1000 genomes]
rs73137105	1.00[AMR][1000 genomes]
rs73137153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73137190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73139332	1.00[AMR][1000 genomes]
rs73139348	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1033466	chr5:93201089-93250608	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1028893	chr5:93213264-93276883	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93181400-93231200	Weak transcription	Adipose Nuclei	Adipose
2	chr5:93194200-93307600	Weak transcription	Left Ventricle	heart
3	chr5:93194400-93232800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr5:93202400-93226400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:93207800-93226200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr5:93210400-93232200	Weak transcription	Primary T cells from cord blood	blood
7	chr5:93213000-93256400	Weak transcription	Primary B cells from cord blood	blood
8	chr5:93215000-93225600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:93216600-93232000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:93218000-93230000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr5:93219600-93226800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr5:93219800-93226200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:93219800-93228800	Weak transcription	Psoas Muscle	Psoas
14	chr5:93222200-93226600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:93222400-93224200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr5:93222800-93223800	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr5:93222800-93226200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr5:93222800-93226600	Weak transcription	HSMMtube	muscle
19	chr5:93222800-93227600	Weak transcription	Brain Substantia Nigra	brain
20	chr5:93223000-93226400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr5:93223000-93226400	Weak transcription	Fetal Lung	lung
22	chr5:93223000-93226400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr5:93223000-93226400	Weak transcription	HSMM	muscle
24	chr5:93223000-93227600	Weak transcription	Brain Hippocampus Middle	brain
25	chr5:93223000-93227800	Weak transcription	HepG2	liver
26	chr5:93223000-93229000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr5:93223000-93230200	Weak transcription	Ovary	ovary
28	chr5:93223200-93226600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr5:93223200-93226800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr5:93223400-93224000	Enhancers	Dnd41	blood
31	chr5:93223400-93224200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr5:93223400-93226400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr5:93223400-93226600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr5:93223400-93227600	Weak transcription	Liver	Liver
35	chr5:93223600-93223800	Enhancers	Fetal Kidney	kidney
36	chr5:93223600-93224000	Enhancers	Primary T helper naive cells from peripheral blood	blood

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