Variant report

Variant	rs73139332
Chromosome Location	chr5:93333043-93333044
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59459894	1.00[AMR][1000 genomes]
rs73137153	1.00[AMR][1000 genomes]
rs73137190	1.00[AMR][1000 genomes]
rs73139307	1.00[AMR][1000 genomes]
rs73139348	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93297400-93349600	Weak transcription	Aorta	Aorta
2	chr5:93314400-93336800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:93314600-93337200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr5:93325400-93337200	Weak transcription	Primary B cells from cord blood	blood
5	chr5:93326800-93335200	Weak transcription	Ovary	ovary
6	chr5:93327000-93394600	Weak transcription	Small Intestine	intestine
7	chr5:93327600-93337600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:93329200-93357000	Weak transcription	HSMM	muscle
9	chr5:93331000-93353000	Weak transcription	Fetal Thymus	thymus
10	chr5:93331200-93333400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:93331200-93336400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr5:93331400-93347000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:93331600-93336800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr5:93331600-93357200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr5:93333000-93334400	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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