Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:81984085..81985677-chr3:81985757..81987319,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10433513	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11127744	0.86[ASN][1000 genomes]
rs11127745	0.89[ASN][1000 genomes]
rs12631503	0.89[ASN][1000 genomes]
rs12638592	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17019416	0.89[ASN][1000 genomes]
rs17019418	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs17019431	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs55988714	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs56019819	0.89[ASN][1000 genomes]
rs56028558	0.95[ASN][1000 genomes]
rs56120615	0.89[ASN][1000 genomes]
rs60428278	0.95[ASN][1000 genomes]
rs61617076	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6784904	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs73134760	0.87[ASN][1000 genomes]
rs73134764	0.87[ASN][1000 genomes]
rs73134800	0.89[ASN][1000 genomes]
rs73134802	0.89[ASN][1000 genomes]
rs73136709	0.89[ASN][1000 genomes]
rs73138733	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs73138765	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs73138781	0.95[ASN][1000 genomes]
rs73138782	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73138783	0.95[ASN][1000 genomes]
rs7611964	0.89[ASN][1000 genomes]
rs7612181	0.89[ASN][1000 genomes]
rs7618777	0.89[ASN][1000 genomes]
rs7619049	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81984000-81990600	Weak transcription	Psoas Muscle	Psoas
2	chr3:81985200-81988000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:81985400-81988000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:81986600-81987800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr3:81986600-81988000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:81986600-81988200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search: