Variant report
Variant | rs7314259 |
---|---|
Chromosome Location | chr12:10406567-10406568 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10505754 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10734822 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10734823 | 0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10734824 | 0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10743878 | 0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10743879 | 0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10743880 | 0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10845093 | 0.96[ASN][1000 genomes] |
rs10845094 | 0.90[ASN][1000 genomes] |
rs10845098 | 0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11053719 | 0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11834167 | 0.92[EUR][1000 genomes] |
rs11837211 | 0.92[EUR][1000 genomes] |
rs12310669 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs2045878 | 0.98[ASN][1000 genomes] |
rs2045881 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2417585 | 0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2417586 | 0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2537782 | 0.92[EUR][1000 genomes] |
rs2537800 | 0.92[EUR][1000 genomes] |
rs2537801 | 0.92[EUR][1000 genomes] |
rs3932012 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4267162 | 0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4372546 | 0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4483689 | 0.84[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4764342 | 0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs4764359 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs55823125 | 0.92[EUR][1000 genomes] |
rs58510785 | 0.92[EUR][1000 genomes] |
rs60221429 | 0.92[EUR][1000 genomes] |
rs61308974 | 0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs61658032 | 0.92[EUR][1000 genomes] |
rs6488277 | 0.92[EUR][1000 genomes] |
rs6488278 | 0.97[ASN][1000 genomes] |
rs6488279 | 0.92[EUR][1000 genomes] |
rs66996903 | 0.92[EUR][1000 genomes] |
rs73053363 | 0.92[EUR][1000 genomes] |
rs73053368 | 0.92[EUR][1000 genomes] |
rs73053387 | 0.92[EUR][1000 genomes] |
rs73053396 | 0.92[EUR][1000 genomes] |
rs73068064 | 0.92[EUR][1000 genomes] |
rs73068080 | 0.92[EUR][1000 genomes] |
rs7959312 | 0.92[EUR][1000 genomes] |
rs7959512 | 0.92[EUR][1000 genomes] |
rs7962426 | 0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7974717 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv898757 | chr12:10229281-10614641 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
2 | nsv1054811 | chr12:10350587-10440005 | Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
3 | nsv832328 | chr12:10398071-10620443 | Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:10398800-10436200 | Weak transcription | Placenta | Placenta |