Variant report

Variant	rs12310669
Chromosome Location	chr12:10404858-10404859
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10505754	0.92[EUR][1000 genomes]
rs10734822	0.92[EUR][1000 genomes]
rs10734823	0.92[EUR][1000 genomes]
rs10734824	0.92[EUR][1000 genomes]
rs10743876	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10743878	0.92[EUR][1000 genomes]
rs10743879	0.92[EUR][1000 genomes]
rs10743880	0.92[EUR][1000 genomes]
rs10772244	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10772245	0.87[ASN][1000 genomes]
rs10772246	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10845098	0.92[EUR][1000 genomes]
rs11053719	0.92[EUR][1000 genomes]
rs11834167	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11837211	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2045881	0.92[EUR][1000 genomes]
rs2417582	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2417584	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2417585	0.92[EUR][1000 genomes]
rs2417586	0.92[EUR][1000 genomes]
rs2537782	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2537800	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2537801	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2900385	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3932012	0.92[EUR][1000 genomes]
rs4267162	0.92[EUR][1000 genomes]
rs4372546	0.92[EUR][1000 genomes]
rs4483689	0.92[EUR][1000 genomes]
rs4764332	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4764333	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4764337	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4764359	0.92[EUR][1000 genomes]
rs55823125	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58510785	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59389382	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59511495	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59761822	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60221429	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61308974	0.92[EUR][1000 genomes]
rs61658032	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6488277	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6488279	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66996903	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7137304	0.96[ASN][1000 genomes]
rs7302157	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7302532	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73053363	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73053368	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73053387	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73053396	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73060081	0.90[ASN][1000 genomes]
rs73062005	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73068064	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73068080	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7314259	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7315203	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7959312	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7959512	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7962426	0.92[EUR][1000 genomes]
rs7974717	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10398800-10436200	Weak transcription	Placenta	Placenta
2	chr12:10399400-10405200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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