Variant report

Variant	rs10743876
Chromosome Location	chr12:10384573-10384574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10505754	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10734822	1.00[CEU][hapmap]
rs10734823	1.00[CEU][hapmap]
rs10734824	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs10743878	1.00[CEU][hapmap]
rs10743879	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10743880	1.00[CEU][hapmap]
rs10772244	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10772245	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10772246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10845077	0.81[AFR][1000 genomes]
rs10845098	1.00[CEU][hapmap]
rs10845099	0.85[GIH][hapmap]
rs11053719	1.00[CEU][hapmap]
rs11539	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11834167	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11837211	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12310669	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2045881	1.00[CEU][hapmap]
rs2417582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2417584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2417585	1.00[CEU][hapmap]
rs2417586	1.00[CEU][hapmap]
rs2537782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2537800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2537801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2900385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4254156	0.87[GIH][hapmap]
rs4267162	1.00[CEU][hapmap]
rs4372546	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4483689	1.00[CEU][hapmap]
rs4764331	0.84[GIH][hapmap]
rs4764332	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4764333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4764337	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4764342	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4764359	1.00[CEU][hapmap]
rs55823125	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58510785	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59389382	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59511495	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59761822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60221429	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61658032	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6488277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6488279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66996903	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7136409	0.84[GIH][hapmap]
rs7137304	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7302157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7302532	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73053363	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73053368	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73053387	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73053396	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73060068	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73060081	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73062005	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73068064	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73068080	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7315203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs765790	0.87[GIH][hapmap]
rs7959312	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7959512	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7960272	1.00[CEU][hapmap]
rs7962426	1.00[CEU][hapmap]
rs7974717	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10366800-10386600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:10376400-10386600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:10376400-10386600	Weak transcription	Brain Substantia Nigra	brain
4	chr12:10376400-10388600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr12:10376400-10395000	Weak transcription	Pancreas	Pancrea
6	chr12:10376400-10397600	Weak transcription	Aorta	Aorta
7	chr12:10376600-10385600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr12:10376800-10385800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:10377000-10385000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:10377000-10386600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr12:10377200-10385200	Weak transcription	Lung	lung
12	chr12:10377200-10386000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr12:10377200-10386000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr12:10377200-10386000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr12:10377200-10386800	Weak transcription	HSMMtube	muscle
16	chr12:10377200-10389000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr12:10377200-10394200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr12:10377200-10394600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr12:10377200-10399000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr12:10377600-10386800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr12:10377600-10386800	Weak transcription	Liver	Liver
22	chr12:10377600-10386800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr12:10377800-10404400	Weak transcription	Left Ventricle	heart
24	chr12:10378800-10386200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr12:10380000-10386600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr12:10380200-10395800	Weak transcription	Thymus	Thymus
27	chr12:10383000-10385200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr12:10384200-10385400	Strong transcription	Placenta	Placenta

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