Variant report

Variant	rs10845099
Chromosome Location	chr12:10420802-10420803
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10505754	0.85[GIH][hapmap];0.82[MKK][hapmap]
rs10505759	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.99[ASN][1000 genomes]
rs10734821	0.89[AMR][1000 genomes]
rs10734822	0.81[ASW][hapmap];0.85[MKK][hapmap]
rs10734824	0.82[ASW][hapmap];0.87[GIH][hapmap];0.86[MKK][hapmap]
rs10743874	0.89[AMR][1000 genomes]
rs10743875	0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10743876	0.85[GIH][hapmap]
rs10743879	0.82[ASW][hapmap];0.85[GIH][hapmap];0.85[MKK][hapmap]
rs10743881	0.82[EUR][1000 genomes]
rs10772248	0.92[ASN][1000 genomes]
rs10772253	0.96[ASN][1000 genomes]
rs10845081	0.82[CHB][hapmap];0.92[ASN][1000 genomes]
rs10845100	0.99[ASN][1000 genomes]
rs11053709	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11053722	0.84[EUR][1000 genomes]
rs11053725	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[ASN][1000 genomes]
rs12304713	0.81[EUR][1000 genomes]
rs12311695	0.82[EUR][1000 genomes]
rs12315681	0.81[EUR][1000 genomes]
rs12315815	0.81[EUR][1000 genomes]
rs12813575	0.81[EUR][1000 genomes]
rs12817905	0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs12828540	0.82[EUR][1000 genomes]
rs12832489	0.81[EUR][1000 genomes]
rs17206564	0.94[TSI][hapmap]
rs2417580	0.85[AMR][1000 genomes]
rs2537782	0.82[GIH][hapmap]
rs2537793	0.81[EUR][1000 genomes]
rs2537800	0.85[GIH][hapmap]
rs2617128	0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs2617135	0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs2617137	0.84[EUR][1000 genomes]
rs2900384	0.84[LWK][hapmap]
rs2900385	0.85[GIH][hapmap]
rs2927558	0.81[EUR][1000 genomes]
rs34282122	0.81[EUR][1000 genomes]
rs34790670	0.82[EUR][1000 genomes]
rs34859528	0.81[EUR][1000 genomes]
rs34956502	0.81[EUR][1000 genomes]
rs35518026	0.81[EUR][1000 genomes]
rs35868193	0.82[EUR][1000 genomes]
rs3898121	0.95[ASN][1000 genomes]
rs4254156	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4325390	0.85[AMR][1000 genomes]
rs4372546	0.82[ASW][hapmap];0.85[GIH][hapmap];0.85[MKK][hapmap]
rs4514515	0.92[ASN][1000 genomes]
rs4764331	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4764341	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4764369	0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs58700703	0.82[EUR][1000 genomes]
rs6488277	0.85[GIH][hapmap]
rs7136409	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs71450033	0.81[EUR][1000 genomes]
rs71450034	0.82[EUR][1000 genomes]
rs7248	0.84[LWK][hapmap]
rs7302532	0.81[GIH][hapmap]
rs765790	1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs765791	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[ASN][1000 genomes]
rs765792	0.94[TSI][hapmap]
rs7953662	0.94[ASN][1000 genomes]
rs7953971	0.92[ASN][1000 genomes]
rs7954328	0.91[ASN][1000 genomes]
rs7958472	0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs7961687	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs7962865	1.00[ASN][1000 genomes]
rs7969181	0.92[ASN][1000 genomes]
rs7972414	0.92[ASN][1000 genomes]
rs7972782	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs7975352	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs7976020	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv557454	chr12:10417260-10440885	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10398800-10436200	Weak transcription	Placenta	Placenta

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