Variant report
| Variant | rs10845100 |
|---|---|
| Chromosome Location | chr12:10423949-10423950 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10505759 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10743875 | 0.89[ASN][1000 genomes] |
| rs10772248 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10772253 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10845081 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10845099 | 0.99[ASN][1000 genomes] |
| rs11053709 | 0.93[ASN][1000 genomes] |
| rs11053725 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3898121 | 0.92[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4254156 | 0.90[ASN][1000 genomes] |
| rs4514515 | 0.91[ASN][1000 genomes] |
| rs4764331 | 0.90[ASN][1000 genomes] |
| rs4764341 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs56272210 | 0.92[EUR][1000 genomes] |
| rs765791 | 0.90[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7953662 | 0.89[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7953971 | 0.91[ASN][1000 genomes] |
| rs7954328 | 0.90[ASN][1000 genomes] |
| rs7962865 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7969181 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7972414 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7975352 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7976020 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv898757 | chr12:10229281-10614641 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
| 2 | nsv1054811 | chr12:10350587-10440005 | Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv832328 | chr12:10398071-10620443 | Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 4 | nsv557454 | chr12:10417260-10440885 | Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:10398800-10436200 | Weak transcription | Placenta | Placenta |
