Variant report

Variant	rs765791
Chromosome Location	chr12:10402388-10402389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10505759	0.91[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10743875	0.94[ASN][1000 genomes]
rs10772248	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10772253	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10845081	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10845099	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[ASN][1000 genomes]
rs10845100	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11053701	0.90[EUR][1000 genomes]
rs11053709	0.99[ASN][1000 genomes]
rs11053725	0.95[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12303774	0.91[EUR][1000 genomes]
rs3898121	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4254156	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs4514515	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4764331	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.96[ASN][1000 genomes]
rs4764341	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7953662	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7953971	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7954328	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7961687	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap]
rs7962865	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7963011	0.87[EUR][1000 genomes]
rs7969181	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7972414	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7972782	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7975352	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7976020	0.95[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10377800-10404400	Weak transcription	Left Ventricle	heart
2	chr12:10395800-10402400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:10397200-10402400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr12:10397200-10402400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr12:10397200-10402400	Weak transcription	Dnd41	blood
6	chr12:10397200-10403000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr12:10398800-10436200	Weak transcription	Placenta	Placenta
8	chr12:10399400-10405200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr12:10400400-10402400	Weak transcription	GM12878-XiMat	blood
10	chr12:10401600-10403800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr12:10401800-10402800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr12:10402000-10403200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr12:10402200-10402400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr12:10402200-10403000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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