Variant report

Variant	rs7963011
Chromosome Location	chr12:10389074-10389075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10389063..10390009-chr12:10714674..10715483,2	K562	blood:
2	chr12:10388060..10389289-chr12:10714524..10715522,5	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10743881	0.86[ASN][1000 genomes]
rs10772248	0.90[EUR][1000 genomes]
rs10845081	0.90[EUR][1000 genomes]
rs10845104	0.84[ASN][1000 genomes]
rs11053701	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12302171	0.98[ASN][1000 genomes]
rs12303774	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12304713	0.86[ASN][1000 genomes]
rs12315681	0.86[ASN][1000 genomes]
rs12315815	0.86[ASN][1000 genomes]
rs12813575	0.86[ASN][1000 genomes]
rs12817905	0.86[ASN][1000 genomes]
rs12818742	0.99[ASN][1000 genomes]
rs12821332	0.95[ASN][1000 genomes]
rs12824930	0.95[ASN][1000 genomes]
rs12828163	0.95[ASN][1000 genomes]
rs12828540	0.86[ASN][1000 genomes]
rs12829898	0.95[ASN][1000 genomes]
rs12831232	0.95[ASN][1000 genomes]
rs12832221	0.95[ASN][1000 genomes]
rs12832489	0.86[ASN][1000 genomes]
rs17206564	0.80[ASN][1000 genomes]
rs2537793	0.86[ASN][1000 genomes]
rs2537805	0.95[ASN][1000 genomes]
rs2617128	0.86[ASN][1000 genomes]
rs34282122	0.86[ASN][1000 genomes]
rs34790670	0.86[ASN][1000 genomes]
rs34859528	0.86[ASN][1000 genomes]
rs34956502	0.86[ASN][1000 genomes]
rs35510688	0.95[ASN][1000 genomes]
rs35518026	0.86[ASN][1000 genomes]
rs35868193	0.86[ASN][1000 genomes]
rs3898121	0.88[EUR][1000 genomes]
rs4346056	0.99[ASN][1000 genomes]
rs4365134	0.99[ASN][1000 genomes]
rs4514515	0.88[EUR][1000 genomes]
rs4764341	0.90[EUR][1000 genomes]
rs56272210	0.88[ASN][1000 genomes]
rs58700703	0.86[ASN][1000 genomes]
rs71450031	0.99[ASN][1000 genomes]
rs71450032	0.99[ASN][1000 genomes]
rs71450033	0.86[ASN][1000 genomes]
rs71450034	0.86[ASN][1000 genomes]
rs765791	0.87[EUR][1000 genomes]
rs765792	0.95[ASN][1000 genomes]
rs7953662	0.90[EUR][1000 genomes]
rs7953971	0.90[EUR][1000 genomes]
rs7954328	0.89[EUR][1000 genomes]
rs7969181	0.90[EUR][1000 genomes]
rs7972414	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10376400-10395000	Weak transcription	Pancreas	Pancrea
2	chr12:10376400-10397600	Weak transcription	Aorta	Aorta
3	chr12:10377200-10394200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr12:10377200-10394600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr12:10377200-10399000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr12:10377800-10404400	Weak transcription	Left Ventricle	heart
7	chr12:10380200-10395800	Weak transcription	Thymus	Thymus
8	chr12:10387200-10396800	Weak transcription	Liver	Liver
9	chr12:10387400-10389800	Weak transcription	Placenta	Placenta
10	chr12:10387400-10390000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr12:10387400-10392000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:10388200-10390400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr12:10388400-10392000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr12:10388600-10389200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr12:10388600-10389600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr12:10388600-10389600	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr12:10388800-10389200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr12:10388800-10389200	Enhancers	Brain Anterior Caudate	brain
19	chr12:10388800-10389200	Enhancers	Fetal Thymus	thymus
20	chr12:10388800-10390600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr12:10389000-10389200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr12:10389000-10389600	Enhancers	Brain Hippocampus Middle	brain

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