Variant report

Variant	rs12828163
Chromosome Location	chr12:10403126-10403127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10743875	0.81[EUR][1000 genomes]
rs10743881	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10845104	0.88[ASN][1000 genomes]
rs11053701	0.95[ASN][1000 genomes]
rs11053709	0.82[EUR][1000 genomes]
rs11830137	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12302171	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12303774	0.95[ASN][1000 genomes]
rs12304713	0.90[ASN][1000 genomes]
rs12311695	0.80[AMR][1000 genomes]
rs12315681	0.90[ASN][1000 genomes]
rs12315815	0.90[ASN][1000 genomes]
rs12321554	0.97[EUR][1000 genomes]
rs12813575	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12817905	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12818742	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12821332	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12824930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12828540	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12829898	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12831232	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12832221	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12832489	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17206564	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2537793	0.90[ASN][1000 genomes]
rs2537805	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2617128	0.90[ASN][1000 genomes]
rs34282122	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34790670	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34859528	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34956502	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35510688	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35518026	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35567183	0.85[EUR][1000 genomes]
rs35868193	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4346056	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4365134	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56272210	0.93[ASN][1000 genomes]
rs58700703	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6488275	0.82[EUR][1000 genomes]
rs71450031	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71450032	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71450033	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs71450034	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs765790	0.84[EUR][1000 genomes]
rs765792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963011	0.95[ASN][1000 genomes]
rs7969664	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10377800-10404400	Weak transcription	Left Ventricle	heart
2	chr12:10398800-10436200	Weak transcription	Placenta	Placenta
3	chr12:10399400-10405200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr12:10401600-10403800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr12:10402000-10403200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr12:10402400-10403200	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr12:10402400-10403200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:10402400-10403200	Enhancers	Dnd41	blood
9	chr12:10403000-10403200	Enhancers	Primary T cells fromperipheralblood	blood

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