Variant report

Variant	rs12321554
Chromosome Location	chr12:10385782-10385783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10743875	0.84[EUR][1000 genomes]
rs11053709	0.82[EUR][1000 genomes]
rs11053722	0.85[ASN][1000 genomes]
rs11830137	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12302171	0.90[EUR][1000 genomes]
rs12311695	0.84[ASN][1000 genomes]
rs12818742	0.98[EUR][1000 genomes]
rs12821332	0.97[EUR][1000 genomes]
rs12824930	0.97[EUR][1000 genomes]
rs12828163	0.97[EUR][1000 genomes]
rs12829898	0.90[EUR][1000 genomes]
rs12831232	0.90[EUR][1000 genomes]
rs12832221	0.90[EUR][1000 genomes]
rs2537805	0.97[EUR][1000 genomes]
rs2617135	0.84[ASN][1000 genomes]
rs2617137	0.85[ASN][1000 genomes]
rs2927558	0.85[ASN][1000 genomes]
rs35510688	0.97[EUR][1000 genomes]
rs35567183	0.85[EUR][1000 genomes]
rs3867485	0.82[ASN][1000 genomes]
rs4346056	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4365134	0.98[EUR][1000 genomes]
rs4764369	0.85[ASN][1000 genomes]
rs6488275	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71450031	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71450032	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs765790	0.81[EUR][1000 genomes]
rs765792	0.97[EUR][1000 genomes]
rs7958472	0.85[ASN][1000 genomes]
rs7969664	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10366800-10386600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:10376400-10386600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:10376400-10386600	Weak transcription	Brain Substantia Nigra	brain
4	chr12:10376400-10388600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr12:10376400-10395000	Weak transcription	Pancreas	Pancrea
6	chr12:10376400-10397600	Weak transcription	Aorta	Aorta
7	chr12:10376800-10385800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:10377000-10386600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:10377200-10386000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr12:10377200-10386000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr12:10377200-10386000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr12:10377200-10386800	Weak transcription	HSMMtube	muscle
13	chr12:10377200-10389000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr12:10377200-10394200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr12:10377200-10394600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr12:10377200-10399000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr12:10377600-10386800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr12:10377600-10386800	Weak transcription	Liver	Liver
19	chr12:10377600-10386800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr12:10377800-10404400	Weak transcription	Left Ventricle	heart
21	chr12:10378800-10386200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr12:10380000-10386600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr12:10380200-10395800	Weak transcription	Thymus	Thymus
24	chr12:10385000-10386600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr12:10385400-10386800	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links