Variant report

Variant	rs4365134
Chromosome Location	chr12:10388004-10388005
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10743875	0.83[EUR][1000 genomes]
rs10743881	0.85[ASN][1000 genomes]
rs10845104	0.82[ASN][1000 genomes]
rs11053701	0.99[ASN][1000 genomes]
rs11053709	0.81[EUR][1000 genomes]
rs11830137	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12302171	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12303774	0.99[ASN][1000 genomes]
rs12304713	0.85[ASN][1000 genomes]
rs12315681	0.85[ASN][1000 genomes]
rs12315815	0.85[ASN][1000 genomes]
rs12321554	0.98[EUR][1000 genomes]
rs12813575	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12817905	0.85[ASN][1000 genomes]
rs12818742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821332	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12824930	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12828163	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12828540	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12829898	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12831232	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12832221	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12832489	0.85[ASN][1000 genomes]
rs17206564	0.83[AMR][1000 genomes]
rs2537793	0.85[ASN][1000 genomes]
rs2537805	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2617128	0.85[ASN][1000 genomes]
rs34282122	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34790670	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34859528	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34956502	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35510688	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35518026	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35567183	0.87[EUR][1000 genomes]
rs35868193	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4346056	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56272210	0.87[ASN][1000 genomes]
rs58700703	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6488275	0.84[EUR][1000 genomes]
rs71450031	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71450032	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71450033	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs71450034	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs765790	0.82[EUR][1000 genomes]
rs765792	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7963011	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10376400-10388600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr12:10376400-10395000	Weak transcription	Pancreas	Pancrea
3	chr12:10376400-10397600	Weak transcription	Aorta	Aorta
4	chr12:10377200-10389000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr12:10377200-10394200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr12:10377200-10394600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr12:10377200-10399000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr12:10377800-10404400	Weak transcription	Left Ventricle	heart
9	chr12:10380200-10395800	Weak transcription	Thymus	Thymus
10	chr12:10387200-10396800	Weak transcription	Liver	Liver
11	chr12:10387400-10389800	Weak transcription	Placenta	Placenta
12	chr12:10387400-10390000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr12:10387400-10392000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr12:10387800-10388400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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