Variant report

Variant	rs7969664
Chromosome Location	chr12:10426804-10426805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10424917..10427474-chr12:10431900..10433911,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10743881	0.89[EUR][1000 genomes]
rs10772258	0.81[ASN][1000 genomes]
rs10845104	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10845106	0.82[ASN][1000 genomes]
rs11053722	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11830137	0.81[ASN][1000 genomes]
rs12303914	0.82[ASN][1000 genomes]
rs12304713	0.90[EUR][1000 genomes]
rs12311695	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12315681	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12315815	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12321554	0.85[ASN][1000 genomes]
rs12813197	0.82[ASN][1000 genomes]
rs12813575	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12814085	0.87[EUR][1000 genomes]
rs12817905	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12821332	0.80[AMR][1000 genomes]
rs12824930	0.80[AMR][1000 genomes]
rs12828163	0.80[AMR][1000 genomes]
rs12828540	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12829898	0.80[AMR][1000 genomes]
rs12831232	0.80[AMR][1000 genomes]
rs12832221	0.80[AMR][1000 genomes]
rs12832489	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17206564	0.84[EUR][1000 genomes]
rs2537793	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2617128	0.90[EUR][1000 genomes]
rs2617135	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2617137	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2927558	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34282122	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34790670	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34859528	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34956502	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35510688	0.80[AMR][1000 genomes]
rs35518026	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35868193	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3867485	0.96[ASN][1000 genomes]
rs4102739	0.82[ASN][1000 genomes]
rs4763505	0.82[ASN][1000 genomes]
rs4764369	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58700703	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6488275	0.81[ASN][1000 genomes]
rs71450033	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71450034	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs765792	0.80[AMR][1000 genomes]
rs7958472	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv557454	chr12:10417260-10440885	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10398800-10436200	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links