Variant report

Variant	rs73062005
Chromosome Location	chr12:10388985-10388986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10388138..10389062-chr12:10714617..10715220,3	K562	blood:
2	chr12:10388060..10389289-chr12:10714524..10715522,5	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10743876	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10772244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10772245	0.97[ASN][1000 genomes]
rs10772246	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11539	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11834167	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11837211	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12310669	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2417582	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2417584	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2537782	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2537800	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2537801	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2900385	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4764332	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4764333	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4764337	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4764342	0.92[EUR][1000 genomes]
rs55823125	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58510785	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59389382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59511495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59761822	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60221429	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61308974	0.82[AMR][1000 genomes]
rs61658032	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6488277	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6488279	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66996903	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7137304	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7302157	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7302532	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73053363	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73053368	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73053387	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73053396	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73060068	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73060081	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73068064	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73068080	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7315203	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7959312	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7959512	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10376400-10395000	Weak transcription	Pancreas	Pancrea
2	chr12:10376400-10397600	Weak transcription	Aorta	Aorta
3	chr12:10377200-10389000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr12:10377200-10394200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr12:10377200-10394600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr12:10377200-10399000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr12:10377800-10404400	Weak transcription	Left Ventricle	heart
8	chr12:10380200-10395800	Weak transcription	Thymus	Thymus
9	chr12:10387200-10396800	Weak transcription	Liver	Liver
10	chr12:10387400-10389800	Weak transcription	Placenta	Placenta
11	chr12:10387400-10390000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr12:10387400-10392000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr12:10388200-10390400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr12:10388400-10392000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr12:10388600-10389200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr12:10388600-10389600	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr12:10388600-10389600	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr12:10388800-10389200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr12:10388800-10389200	Enhancers	Brain Anterior Caudate	brain
20	chr12:10388800-10389200	Enhancers	Fetal Thymus	thymus
21	chr12:10388800-10390600	Enhancers	Primary T cells fromperipheralblood	blood

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