Variant report

Variant	rs7315203
Chromosome Location	chr12:10386223-10386224
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10743876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10772244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10772245	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10772246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11539	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11834167	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11837211	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12310669	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2417582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2417584	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2537782	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2537800	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2537801	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2900385	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4764332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4764333	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4764337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4764342	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55823125	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58510785	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59389382	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59511495	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59761822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60221429	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61658032	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6488277	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6488279	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66996903	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7137304	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7302157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7302532	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73053363	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73053368	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73053387	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73053396	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73060068	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73060081	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73062005	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73068064	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73068080	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7959312	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7959512	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10366800-10386600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:10376400-10386600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:10376400-10386600	Weak transcription	Brain Substantia Nigra	brain
4	chr12:10376400-10388600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr12:10376400-10395000	Weak transcription	Pancreas	Pancrea
6	chr12:10376400-10397600	Weak transcription	Aorta	Aorta
7	chr12:10377000-10386600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr12:10377200-10386800	Weak transcription	HSMMtube	muscle
9	chr12:10377200-10389000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr12:10377200-10394200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr12:10377200-10394600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr12:10377200-10399000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr12:10377600-10386800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr12:10377600-10386800	Weak transcription	Liver	Liver
15	chr12:10377600-10386800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr12:10377800-10404400	Weak transcription	Left Ventricle	heart
17	chr12:10380000-10386600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr12:10380200-10395800	Weak transcription	Thymus	Thymus
19	chr12:10385000-10386600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr12:10385400-10386800	Weak transcription	Placenta	Placenta
21	chr12:10386000-10386400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
22	chr12:10386000-10387200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
23	chr12:10386200-10387400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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