Variant report

Variant	rs73142838
Chromosome Location	chr5:92251668-92251669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13359917	1.00[EUR][1000 genomes]
rs17082932	1.00[EUR][1000 genomes]
rs61125688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6897521	1.00[EUR][1000 genomes]
rs73144809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73144811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73144814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830398	chr5:92102826-92281331	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1022712	chr5:92191693-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1028930	chr5:92194772-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv823129	chr5:92222972-92280793	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92245200-92252200	Weak transcription	Ovary	ovary
2	chr5:92245400-92252000	Weak transcription	Osteobl	bone
3	chr5:92246400-92251800	Weak transcription	Fetal Kidney	kidney
4	chr5:92246400-92252000	Weak transcription	Fetal Lung	lung
5	chr5:92246600-92258000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:92247200-92251800	Weak transcription	A549	lung
7	chr5:92247200-92252200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:92247400-92252000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:92247400-92258000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:92248600-92254600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:92249400-92258000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:92250200-92251800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:92250800-92251800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:92251600-92253000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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