Variant report

Variant	rs17082932
Chromosome Location	chr5:92447472-92447473
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1078825	0.88[AFR][1000 genomes]
rs1460743	1.00[EUR][1000 genomes]
rs56287127	1.00[EUR][1000 genomes]
rs57163507	1.00[EUR][1000 genomes]
rs58422066	1.00[EUR][1000 genomes]
rs58841810	1.00[EUR][1000 genomes]
rs61125688	1.00[EUR][1000 genomes]
rs61576293	1.00[EUR][1000 genomes]
rs6884164	1.00[EUR][1000 genomes]
rs73129347	1.00[EUR][1000 genomes]
rs73129357	1.00[EUR][1000 genomes]
rs73129377	1.00[EUR][1000 genomes]
rs73129383	1.00[EUR][1000 genomes]
rs73129387	1.00[EUR][1000 genomes]
rs73129390	1.00[EUR][1000 genomes]
rs73131359	1.00[EUR][1000 genomes]
rs73142838	1.00[EUR][1000 genomes]
rs73144809	1.00[EUR][1000 genomes]
rs73144811	1.00[EUR][1000 genomes]
rs73144814	1.00[EUR][1000 genomes]
rs7715030	1.00[EUR][1000 genomes]
rs7720992	1.00[EUR][1000 genomes]
rs7729682	1.00[EUR][1000 genomes]
rs9784703	1.00[EUR][1000 genomes]
rs9784712	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92443800-92450800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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