Variant report

Variant	rs57163507
Chromosome Location	chr5:92671829-92671830
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1460743	1.00[EUR][1000 genomes]
rs17082932	1.00[EUR][1000 genomes]
rs56287127	1.00[EUR][1000 genomes]
rs58422066	1.00[EUR][1000 genomes]
rs58841810	1.00[EUR][1000 genomes]
rs61576293	1.00[EUR][1000 genomes]
rs6884164	1.00[EUR][1000 genomes]
rs73129347	1.00[EUR][1000 genomes]
rs73129357	1.00[EUR][1000 genomes]
rs73129377	1.00[EUR][1000 genomes]
rs73129383	1.00[EUR][1000 genomes]
rs73129387	1.00[EUR][1000 genomes]
rs73129390	1.00[EUR][1000 genomes]
rs73131359	1.00[EUR][1000 genomes]
rs7715030	1.00[EUR][1000 genomes]
rs7720992	1.00[EUR][1000 genomes]
rs7729682	1.00[EUR][1000 genomes]
rs9784703	1.00[EUR][1000 genomes]
rs9784712	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92666400-92676200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:92667800-92672000	Weak transcription	HMEC	breast
3	chr5:92667800-92672200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:92668000-92672000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:92668400-92672200	Weak transcription	NHEK	skin
6	chr5:92671800-92673000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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