Variant report

Variant	rs73142939
Chromosome Location	chr5:93701308-93701309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:93700754..93703730-chr5:93710260..93713208,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10036091	1.00[EUR][1000 genomes]
rs10056742	1.00[EUR][1000 genomes]
rs10062463	1.00[EUR][1000 genomes]
rs13355036	1.00[EUR][1000 genomes]
rs17083733	1.00[EUR][1000 genomes]
rs17083764	1.00[EUR][1000 genomes]
rs2044909	1.00[EUR][1000 genomes]
rs28404931	1.00[EUR][1000 genomes]
rs4367286	1.00[EUR][1000 genomes]
rs56077798	1.00[EUR][1000 genomes]
rs56276230	1.00[EUR][1000 genomes]
rs58561320	1.00[EUR][1000 genomes]
rs59795620	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60864844	1.00[EUR][1000 genomes]
rs61498063	1.00[EUR][1000 genomes]
rs6866319	1.00[EUR][1000 genomes]
rs6875629	1.00[EUR][1000 genomes]
rs73132694	1.00[EUR][1000 genomes]
rs73132696	1.00[EUR][1000 genomes]
rs73139348	1.00[EUR][1000 genomes]
rs73141221	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73142950	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73142958	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73142961	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73145042	1.00[EUR][1000 genomes]
rs73145044	1.00[EUR][1000 genomes]
rs73145045	1.00[EUR][1000 genomes]
rs7708233	1.00[EUR][1000 genomes]
rs7711380	1.00[EUR][1000 genomes]
rs7725462	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv2753025	chr5:93356544-93812844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1027890	chr5:93584978-93873704	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv537809	chr5:93584978-93873704	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv518161	chr5:93643170-93789309	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv523867	chr5:93643170-93789309	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv598950	chr5:93666346-93788579	Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1023421	chr5:93679661-93911066	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93674200-93716400	Weak transcription	Hela-S3	cervix
2	chr5:93682200-93775800	Weak transcription	Ovary	ovary
3	chr5:93696400-93765400	Weak transcription	Aorta	Aorta
4	chr5:93698000-93707800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:93698400-93702000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr5:93698600-93702200	Weak transcription	NHEK	skin
7	chr5:93698800-93702000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:93698800-93702000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:93698800-93702000	Weak transcription	HMEC	breast
10	chr5:93699200-93701800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:93699200-93702200	Weak transcription	Stomach Mucosa	stomach
12	chr5:93699400-93702000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:93699400-93702600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:93699800-93708200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:93700000-93702000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr5:93700400-93701600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr5:93701200-93702600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr5:93701200-93703200	Enhancers	Primary neutrophils fromperipheralblood	blood

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