Variant report

Variant	rs17083733
Chromosome Location	chr5:93810178-93810179
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:93807677..93810311-chr5:93813307..93815784,2	MCF-7	breast:
2	chr5:93797694..93800436-chr5:93809133..93812008,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10036091	1.00[EUR][1000 genomes]
rs10056742	1.00[EUR][1000 genomes]
rs10062463	1.00[EUR][1000 genomes]
rs13355036	1.00[EUR][1000 genomes]
rs17083764	1.00[EUR][1000 genomes]
rs2044909	1.00[EUR][1000 genomes]
rs28404931	1.00[EUR][1000 genomes]
rs4367286	1.00[EUR][1000 genomes]
rs56077798	1.00[EUR][1000 genomes]
rs56276230	1.00[EUR][1000 genomes]
rs58561320	1.00[EUR][1000 genomes]
rs59795620	1.00[EUR][1000 genomes]
rs60864844	1.00[EUR][1000 genomes]
rs61498063	1.00[EUR][1000 genomes]
rs6866319	1.00[EUR][1000 genomes]
rs6875629	1.00[EUR][1000 genomes]
rs73132694	1.00[EUR][1000 genomes]
rs73132696	1.00[EUR][1000 genomes]
rs73140279	1.00[EUR][1000 genomes]
rs73141221	1.00[EUR][1000 genomes]
rs73142939	1.00[EUR][1000 genomes]
rs73142950	1.00[EUR][1000 genomes]
rs73142958	1.00[EUR][1000 genomes]
rs73142961	1.00[EUR][1000 genomes]
rs73145042	1.00[EUR][1000 genomes]
rs73145044	1.00[EUR][1000 genomes]
rs73145045	1.00[EUR][1000 genomes]
rs7708233	1.00[EUR][1000 genomes]
rs7711380	1.00[EUR][1000 genomes]
rs7725462	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv2753025	chr5:93356544-93812844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1027890	chr5:93584978-93873704	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv537809	chr5:93584978-93873704	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv1023421	chr5:93679661-93911066	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1033608	chr5:93741558-93812885	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2758002	chr5:93765205-94042201	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	esv2759354	chr5:93765205-94042201	Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
10	nsv598951	chr5:93788579-93812885	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv534495	chr5:93789736-93962131	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93776400-93811400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:93795800-93819200	Weak transcription	Liver	Liver
3	chr5:93800200-93812200	Weak transcription	Aorta	Aorta
4	chr5:93800800-93815200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:93801000-93844400	Weak transcription	Pancreas	Pancrea
6	chr5:93802000-93810400	Weak transcription	Primary T cells from cord blood	blood
7	chr5:93803800-93821000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr5:93806000-93813800	Weak transcription	Brain Anterior Caudate	brain
9	chr5:93806200-93810400	Weak transcription	Fetal Brain Female	brain
10	chr5:93806800-93810800	Weak transcription	Brain Angular Gyrus	brain
11	chr5:93807200-93810200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:93807200-93816800	Weak transcription	Fetal Stomach	stomach
13	chr5:93807400-93812200	Weak transcription	Gastric	stomach
14	chr5:93808200-93810600	Weak transcription	Adipose Nuclei	Adipose
15	chr5:93808600-93810200	Enhancers	Fetal Lung	lung
16	chr5:93808600-93810200	Genic enhancers	Hela-S3	cervix
17	chr5:93808800-93813600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr5:93809200-93814000	Weak transcription	Fetal Muscle Leg	muscle
19	chr5:93809400-93819000	Weak transcription	Left Ventricle	heart
20	chr5:93809800-93810200	Enhancers	Ovary	ovary

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