Variant report

Variant	rs73140279
Chromosome Location	chr5:93976824-93976825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:93969932..93973613-chr5:93973766..93976891,3	K562	blood:
2	chr5:93973156..93974840-chr5:93976350..93977887,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10036091	1.00[EUR][1000 genomes]
rs10056742	1.00[EUR][1000 genomes]
rs10062463	1.00[EUR][1000 genomes]
rs13355036	1.00[EUR][1000 genomes]
rs17083733	1.00[EUR][1000 genomes]
rs17083764	1.00[EUR][1000 genomes]
rs2044909	1.00[EUR][1000 genomes]
rs28404931	1.00[EUR][1000 genomes]
rs4367286	1.00[EUR][1000 genomes]
rs56077798	1.00[EUR][1000 genomes]
rs56276230	1.00[EUR][1000 genomes]
rs58561320	1.00[EUR][1000 genomes]
rs61498063	1.00[EUR][1000 genomes]
rs6866319	1.00[EUR][1000 genomes]
rs6875629	1.00[EUR][1000 genomes]
rs73132694	1.00[EUR][1000 genomes]
rs73132696	1.00[EUR][1000 genomes]
rs73133924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73133925	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73133938	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73145042	1.00[EUR][1000 genomes]
rs73145044	1.00[EUR][1000 genomes]
rs73145045	1.00[EUR][1000 genomes]
rs73150147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73150165	1.00[EUR][1000 genomes]
rs7708233	1.00[EUR][1000 genomes]
rs7711380	1.00[EUR][1000 genomes]
rs7725462	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758002	chr5:93765205-94042201	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2759354	chr5:93765205-94042201	Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv462254	chr5:93956937-94056825	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv598953	chr5:93956937-94056825	ZNF genes & repeats Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv882386	chr5:93973177-94008969	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93955000-93995400	Weak transcription	Gastric	stomach
2	chr5:93955600-93990800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:93955800-93995400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:93955800-94027600	Weak transcription	NH-A	brain
5	chr5:93956200-93993200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr5:93957800-93982400	Weak transcription	Psoas Muscle	Psoas
7	chr5:93963800-93995800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:93964600-93995200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:93965800-93988400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr5:93966600-93980000	Weak transcription	Left Ventricle	heart
11	chr5:93966600-93990800	Weak transcription	Brain Hippocampus Middle	brain
12	chr5:93967200-93979600	Weak transcription	Brain Anterior Caudate	brain
13	chr5:93967400-93991400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr5:93967600-93979800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr5:93967600-93988200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:93967800-93978200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:93967800-93991000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr5:93968000-93990200	Weak transcription	Fetal Kidney	kidney
19	chr5:93968000-93995200	Weak transcription	HSMM	muscle
20	chr5:93969200-93978200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:93969400-94008400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr5:93969600-93977400	ZNF genes & repeats	Primary B cells from cord blood	blood
23	chr5:93971400-93995400	Weak transcription	Spleen	Spleen
24	chr5:93972000-93977800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr5:93972000-93978000	ZNF genes & repeats	A549	lung
26	chr5:93972600-93978000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:93972800-93977000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr5:93973200-93988400	Weak transcription	Fetal Brain Male	brain
29	chr5:93973400-93977000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr5:93973400-93989800	Weak transcription	Brain Angular Gyrus	brain
31	chr5:93973800-93995200	Weak transcription	Lung	lung
32	chr5:93973800-94004200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr5:93974200-93977200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr5:93974200-93995400	Weak transcription	Ovary	ovary
35	chr5:93974400-93977200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
36	chr5:93974400-93995200	Weak transcription	Thymus	Thymus
37	chr5:93974600-93978200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
38	chr5:93974600-93993400	Strong transcription	Hela-S3	cervix
39	chr5:93975200-93988400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr5:93975400-93981600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr5:93975600-93977000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr5:93975600-93977200	ZNF genes & repeats	Primary T cells from cord blood	blood
43	chr5:93975600-93979200	Strong transcription	Fetal Thymus	thymus
44	chr5:93975600-93979800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr5:93975600-93988400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr5:93975600-93990600	Weak transcription	Fetal Heart	heart
47	chr5:93975600-93990800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr5:93975600-93995200	Weak transcription	Esophagus	oesophagus
49	chr5:93975600-93995200	Weak transcription	Fetal Stomach	stomach
50	chr5:93975600-94012000	Weak transcription	Aorta	Aorta

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