Variant report

Variant	rs73143482
Chromosome Location	chr3:25190079-25190080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17015907	1.00[AMR][1000 genomes]
rs58484976	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61283832	0.85[AFR][1000 genomes]
rs6764236	0.85[AFR][1000 genomes]
rs73145369	1.00[AMR][1000 genomes]
rs73145379	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73145384	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73145390	1.00[AMR][1000 genomes]
rs73145395	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151262	0.92[AFR][1000 genomes]
rs7626452	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876631	chr3:25185448-25231571	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25185600-25192200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:25186600-25191800	Weak transcription	Fetal Stomach	stomach
3	chr3:25187400-25191000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:25190000-25190400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:25190000-25190600	Enhancers	Fetal Heart	heart
6	chr3:25190000-25191800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links