Variant report

Variant	rs73143942
Chromosome Location	chr5:94782497-94782498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:94768113..94770869-chr5:94781811..94784172,2	K562	blood:
2	chr5:94774570..94777503-chr5:94779746..94783694,3	K562	blood:
3	chr5:94779335..94782524-chr5:94785930..94789104,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225165	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs59434020	1.00[AFR][1000 genomes]
rs73143938	0.92[AFR][1000 genomes]
rs73143944	1.00[AFR][1000 genomes]
rs73143957	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73145958	1.00[AFR][1000 genomes]
rs73145992	1.00[AFR][1000 genomes]
rs73145995	1.00[AFR][1000 genomes]
rs73147909	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94777000-94798600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:94778000-94783200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:94778000-94783200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:94778800-94783000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:94778800-94783000	Weak transcription	Gastric	stomach
6	chr5:94779000-94784800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:94780400-94810800	Weak transcription	Pancreas	Pancrea
8	chr5:94781000-94782600	Enhancers	HMEC	breast
9	chr5:94781000-94783000	Enhancers	Hela-S3	cervix
10	chr5:94781000-94783400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:94781200-94783200	Enhancers	NHEK	skin
12	chr5:94781200-94783600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr5:94781200-94783600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:94781400-94782600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:94781400-94783000	Enhancers	HSMMtube	muscle
16	chr5:94781400-94783400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:94781400-94783400	Enhancers	NH-A	brain
18	chr5:94781400-94783600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr5:94781400-94783600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr5:94781400-94783600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:94781400-94783600	Enhancers	K562	blood
22	chr5:94781600-94782800	Enhancers	Osteobl	bone
23	chr5:94781600-94783200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:94782000-94782800	Weak transcription	Stomach Mucosa	stomach
25	chr5:94782000-94783400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr5:94782000-94810200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr5:94782200-94783000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr5:94782200-94783200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr5:94782200-94783200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr5:94782200-94784200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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