Variant report

Variant	rs73145995
Chromosome Location	chr5:94808053-94808054
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs59434020	1.00[AFR][1000 genomes]
rs73143938	0.92[AFR][1000 genomes]
rs73143942	1.00[AFR][1000 genomes]
rs73143944	1.00[AFR][1000 genomes]
rs73143957	0.84[AFR][1000 genomes]
rs73145958	1.00[AFR][1000 genomes]
rs73145992	1.00[AFR][1000 genomes]
rs73147909	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv598954	chr5:94783175-94859599	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94780400-94810800	Weak transcription	Pancreas	Pancrea
2	chr5:94782000-94810200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:94788400-94811200	Weak transcription	Small Intestine	intestine
4	chr5:94788800-94822000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:94790600-94810800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:94791800-94811200	Weak transcription	Hela-S3	cervix
7	chr5:94792600-94817800	Weak transcription	Brain Substantia Nigra	brain
8	chr5:94792600-94821800	Weak transcription	Right Ventricle	heart
9	chr5:94794400-94810800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:94794600-94810800	Weak transcription	Spleen	Spleen
11	chr5:94794800-94817600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:94795200-94826600	Weak transcription	NHEK	skin
13	chr5:94795400-94810400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:94795400-94814000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:94796000-94810800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:94796800-94810800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr5:94797000-94817000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr5:94797000-94819200	Weak transcription	HepG2	liver
19	chr5:94797200-94811200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr5:94797400-94810800	Weak transcription	Fetal Intestine Small	intestine
21	chr5:94799200-94810800	Weak transcription	Esophagus	oesophagus
22	chr5:94799200-94810800	Weak transcription	Fetal Stomach	stomach
23	chr5:94799200-94810800	Weak transcription	Gastric	stomach
24	chr5:94799200-94810800	Weak transcription	Lung	lung
25	chr5:94799200-94810800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr5:94799200-94810800	Weak transcription	Thymus	Thymus
27	chr5:94799200-94811000	Weak transcription	Ovary	ovary
28	chr5:94799200-94811200	Weak transcription	Brain Angular Gyrus	brain
29	chr5:94799200-94811200	Weak transcription	Colonic Mucosa	Colon
30	chr5:94799200-94811200	Weak transcription	Colon Smooth Muscle	Colon
31	chr5:94799200-94812200	Weak transcription	Fetal Kidney	kidney
32	chr5:94799200-94821600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr5:94799200-94834800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:94801600-94808400	Strong transcription	Placenta	Placenta
35	chr5:94802000-94821600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr5:94802200-94810800	Weak transcription	Left Ventricle	heart
37	chr5:94802200-94813600	Weak transcription	HMEC	breast
38	chr5:94802200-94816200	Weak transcription	Fetal Brain Male	brain
39	chr5:94802400-94808600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr5:94804200-94817800	Weak transcription	Fetal Heart	heart
41	chr5:94804600-94810600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr5:94804600-94810800	Weak transcription	NHLF	lung
43	chr5:94804600-94811200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr5:94804600-94811400	Weak transcription	A549	lung
45	chr5:94804600-94816600	Weak transcription	Brain Germinal Matrix	brain
46	chr5:94804600-94817000	Weak transcription	GM12878-XiMat	blood
47	chr5:94804600-94821600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr5:94804600-94823000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr5:94804800-94810200	Weak transcription	Adipose Nuclei	Adipose
50	chr5:94804800-94810800	Weak transcription	Fetal Lung	lung

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