Variant report
| Variant | rs73144595 |
|---|---|
| Chromosome Location | chr5:98406056-98406057 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:98403925..98406393-chr5:98408428..98410098,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11959431 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17166785 | 1.00[AMR][1000 genomes] |
| rs59601763 | 1.00[AMR][1000 genomes] |
| rs60989401 | 0.82[AFR][1000 genomes] |
| rs61174020 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6596776 | 1.00[AMR][1000 genomes] |
| rs73134022 | 1.00[AMR][1000 genomes] |
| rs73137719 | 1.00[AMR][1000 genomes] |
| rs73137720 | 1.00[AMR][1000 genomes] |
| rs73157626 | 0.81[AFR][1000 genomes] |
| rs73157630 | 1.00[AMR][1000 genomes] |
| rs73157639 | 1.00[AMR][1000 genomes] |
| rs73157648 | 1.00[AMR][1000 genomes] |
| rs73776747 | 1.00[AMR][1000 genomes] |
| rs73776749 | 1.00[AMR][1000 genomes] |
| rs7716779 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024391 | chr5:98355665-98653657 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv599118 | chr5:98358191-99029453 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv599119 | chr5:98358191-99315677 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:98403800-98406600 | Weak transcription | K562 | blood |
