Variant report

Variant	rs73157648
Chromosome Location	chr5:98396026-98396027
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:98239512..98242254-chr5:98395636..98397336,2	K562	blood:
2	chr5:98263463..98264993-chr5:98394604..98397406,2	K562	blood:
3	chr5:98241310..98242211-chr5:98395923..98396741,3	MCF-7	breast:
4	chr5:98386273..98389246-chr5:98395943..98397711,2	K562	blood:
5	chr5:98367873..98368452-chr5:98395154..98396281,3	MCF-7	breast:
6	chr5:98241328..98242320-chr5:98395720..98396727,8	K562	blood:

Variant related genes	Relation type
ENSG00000248489	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11959431	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59601763	1.00[AMR][1000 genomes]
rs61174020	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134022	1.00[AMR][1000 genomes]
rs73144595	1.00[AMR][1000 genomes]
rs73157630	1.00[AMR][1000 genomes]
rs73157639	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98387800-98396600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:98392400-98396600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:98393200-98397800	Enhancers	Primary B cells from peripheral blood	blood
4	chr5:98393800-98396400	Weak transcription	HMEC	breast
5	chr5:98393800-98396600	Weak transcription	HepG2	liver
6	chr5:98394600-98396400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:98395000-98398200	Enhancers	GM12878-XiMat	blood
8	chr5:98395800-98396200	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr5:98395800-98396200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr5:98395800-98396200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr5:98395800-98396200	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr5:98395800-98396400	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr5:98395800-98396400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr5:98395800-98396600	Active TSS	Brain Anterior Caudate	brain
15	chr5:98395800-98396800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr5:98395800-98397200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:98396000-98396200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr5:98396000-98396200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr5:98396000-98396200	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr5:98396000-98396200	Enhancers	Liver	Liver
21	chr5:98396000-98396200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
22	chr5:98396000-98396200	Flanking Active TSS	Dnd41	blood
23	chr5:98396000-98396200	Flanking Active TSS	NHDF-Ad	bronchial
24	chr5:98396000-98396400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr5:98396000-98396400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr5:98396000-98396400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:98396000-98396400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
28	chr5:98396000-98396400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
29	chr5:98396000-98396400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr5:98396000-98396400	Enhancers	HUVEC	blood vessel
31	chr5:98396000-98396400	Active TSS	NHLF	lung
32	chr5:98396000-98396600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr5:98396000-98396600	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr5:98396000-98396600	Active TSS	Rectal Smooth Muscle	rectum
35	chr5:98396000-98396600	Active TSS	A549	lung
36	chr5:98396000-98396600	Enhancers	NHEK	skin
37	chr5:98396000-98396600	Enhancers	Osteobl	bone
38	chr5:98396000-98396800	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr5:98396000-98396800	Enhancers	Brain Hippocampus Middle	brain
40	chr5:98396000-98396800	Enhancers	Fetal Kidney	kidney
41	chr5:98396000-98396800	Enhancers	Rectal Mucosa Donor 29	rectum
42	chr5:98396000-98397200	Enhancers	Muscle Satellite Cultured Cells	--
43	chr5:98396000-98397400	Enhancers	Adipose Nuclei	Adipose
44	chr5:98396000-98397600	Flanking Active TSS	NH-A	brain

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