Variant report

Variant	rs73145911
Chromosome Location	chr7:66392791-66392792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:66391341..66394303-chr7:66398418..66401145,2	MCF-7	breast:
2	chr7:66391302..66393822-chr7:66405825..66407426,2	K562	blood:
3	chr7:66385788..66388541-chr7:66389275..66392826,4	MCF-7	breast:
4	chr7:66392066..66395575-chr7:66397284..66400489,4	K562	blood:
5	chr7:65958803..65960399-chr7:66390332..66392925,2	K562	blood:
6	chr7:66390822..66393566-chr7:66398113..66400067,2	K562	blood:
7	chr7:66391798..66393449-chr7:66394205..66396474,2	MCF-7	breast:
8	chr7:66384799..66388848-chr7:66389441..66396879,12	K562	blood:

No data

Variant related genes	Relation type
ENSG00000106609	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10156059	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10224189	0.82[EUR][1000 genomes]
rs10226191	0.84[EUR][1000 genomes]
rs10228964	0.83[ASN][1000 genomes]
rs10234640	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10235638	0.81[EUR][1000 genomes]
rs10241528	0.80[EUR][1000 genomes]
rs10245017	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10247815	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10263993	0.80[EUR][1000 genomes]
rs10264433	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10264555	0.83[ASN][1000 genomes]
rs10266792	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10280816	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13437994	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17747927	0.83[EUR][1000 genomes]
rs17748115	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2013707	0.81[EUR][1000 genomes]
rs28472679	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28501161	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28641990	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28675035	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28817095	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3800818	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57774708	0.83[EUR][1000 genomes]
rs57875851	0.84[EUR][1000 genomes]
rs59693594	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60026498	0.83[EUR][1000 genomes]
rs6965680	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6971508	0.81[AMR][1000 genomes]
rs71526586	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73139976	0.82[EUR][1000 genomes]
rs73141980	0.84[EUR][1000 genomes]
rs73143921	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73145924	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73151646	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73151665	0.81[ASN][1000 genomes]
rs7785883	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7809359	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7809535	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs868960	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs73145911	GS1-124K5.12	cis	lung	GTEx
rs73145911	GS1-124K5.12	cis	Skin Sun Exposed Lower leg	GTEx
rs73145911	GS1-124K5.12	cis	Artery Tibial	GTEx
rs73145911	GS1-124K5.12	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66387400-66395000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:66387400-66395000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:66387600-66393400	Weak transcription	Fetal Heart	heart
4	chr7:66387600-66394800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:66387600-66394800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:66387600-66394800	Weak transcription	Esophagus	oesophagus
7	chr7:66387600-66395000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:66387600-66395200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:66387600-66395200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:66387600-66407200	Weak transcription	NH-A	brain
11	chr7:66387600-66409800	Weak transcription	Fetal Kidney	kidney
12	chr7:66387600-66428000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:66387800-66397200	Weak transcription	Osteobl	bone
14	chr7:66388000-66394600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:66388200-66393400	Weak transcription	HMEC	breast
16	chr7:66388200-66395000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:66388200-66406800	Weak transcription	NHLF	lung
18	chr7:66388400-66393400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr7:66388400-66394600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:66388400-66401200	Weak transcription	Fetal Lung	lung
21	chr7:66388400-66406800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:66388400-66406800	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr7:66388600-66394600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr7:66388600-66395000	Strong transcription	NHEK	skin
25	chr7:66388600-66395400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:66388600-66396000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr7:66388600-66398000	Weak transcription	Placenta	Placenta
28	chr7:66388600-66403600	Weak transcription	HUVEC	blood vessel
29	chr7:66388600-66403800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr7:66388600-66406800	Weak transcription	NHDF-Ad	bronchial
31	chr7:66388800-66394000	Weak transcription	Colonic Mucosa	Colon
32	chr7:66388800-66395200	Weak transcription	Brain Substantia Nigra	brain
33	chr7:66388800-66395600	Weak transcription	Ovary	ovary
34	chr7:66389000-66392800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr7:66389000-66392800	Weak transcription	Gastric	stomach
36	chr7:66389000-66392800	Weak transcription	Right Ventricle	heart
37	chr7:66389000-66393800	Weak transcription	Left Ventricle	heart
38	chr7:66389000-66394200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr7:66389000-66395200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr7:66389000-66396000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr7:66389000-66406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr7:66389200-66392800	Weak transcription	Hela-S3	cervix
43	chr7:66389200-66393200	Weak transcription	Adipose Nuclei	Adipose
44	chr7:66389200-66394800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr7:66389200-66395000	Weak transcription	Liver	Liver
46	chr7:66389200-66395000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr7:66389200-66395200	Weak transcription	Primary T cells from cord blood	blood
48	chr7:66389200-66395600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr7:66389200-66398200	Weak transcription	Colon Smooth Muscle	Colon
50	chr7:66389200-66398400	Weak transcription	Brain Angular Gyrus	brain

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