Variant report

Variant	rs10263993
Chromosome Location	chr7:66396910-66396911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66385169..66388074-chr7:66392898..66397062,6	MCF-7	breast:
2	chr7:66393271..66394873-chr7:66396881..66398631,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106609	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10156059	0.81[EUR][1000 genomes]
rs10231411	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10232188	0.81[AFR][1000 genomes]
rs10234322	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10234747	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10235334	0.83[AFR][1000 genomes]
rs10235638	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241528	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10242870	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10247815	0.81[EUR][1000 genomes]
rs10250124	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10250831	0.86[AFR][1000 genomes]
rs10258628	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10264873	0.83[AFR][1000 genomes]
rs10265069	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10266792	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10267253	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10267834	0.82[EUR][1000 genomes]
rs10278343	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10279240	0.83[AFR][1000 genomes]
rs10281090	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10282310	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10282522	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1064795	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12532829	0.86[AFR][1000 genomes]
rs12532843	0.83[AFR][1000 genomes]
rs12533298	0.83[AFR][1000 genomes]
rs12533724	0.83[AFR][1000 genomes]
rs12534188	0.81[AFR][1000 genomes]
rs12536003	0.88[AFR][1000 genomes]
rs13437994	0.83[EUR][1000 genomes]
rs13438432	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17138017	0.91[AFR][1000 genomes]
rs17680606	0.88[AFR][1000 genomes]
rs17747927	0.80[EUR][1000 genomes]
rs17748115	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs28460006	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28472679	0.81[EUR][1000 genomes]
rs28501161	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs28524571	0.81[AFR][1000 genomes]
rs28560293	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28590087	0.83[AFR][1000 genomes]
rs28641990	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs28675035	0.81[EUR][1000 genomes]
rs3778907	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3778916	0.83[AFR][1000 genomes]
rs3800818	0.81[EUR][1000 genomes]
rs3823607	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3823609	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4617036	0.81[AFR][1000 genomes]
rs4718417	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57774708	0.80[EUR][1000 genomes]
rs59693594	0.83[EUR][1000 genomes]
rs60026498	0.80[EUR][1000 genomes]
rs60972148	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62465751	0.91[AFR][1000 genomes]
rs62465753	0.88[AFR][1000 genomes]
rs62466579	0.83[AFR][1000 genomes]
rs67408913	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6965680	0.80[EUR][1000 genomes]
rs6974601	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71526586	0.84[EUR][1000 genomes]
rs73139941	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73143921	0.80[EUR][1000 genomes]
rs73143998	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73145911	0.80[EUR][1000 genomes]
rs73145924	0.83[EUR][1000 genomes]
rs73151646	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7455757	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7777631	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7796977	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7809359	0.81[EUR][1000 genomes]
rs7809535	0.81[EUR][1000 genomes]
rs868960	0.84[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10263993	GS1-124K5.12	cis	Adipose Subcutaneous	GTEx
rs10263993	GS1-124K5.12	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66387600-66407200	Weak transcription	NH-A	brain
2	chr7:66387600-66409800	Weak transcription	Fetal Kidney	kidney
3	chr7:66387600-66428000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:66387800-66397200	Weak transcription	Osteobl	bone
5	chr7:66388200-66406800	Weak transcription	NHLF	lung
6	chr7:66388400-66401200	Weak transcription	Fetal Lung	lung
7	chr7:66388400-66406800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:66388400-66406800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr7:66388600-66398000	Weak transcription	Placenta	Placenta
10	chr7:66388600-66403600	Weak transcription	HUVEC	blood vessel
11	chr7:66388600-66403800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:66388600-66406800	Weak transcription	NHDF-Ad	bronchial
13	chr7:66389000-66406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:66389200-66398200	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:66389200-66398400	Weak transcription	Brain Angular Gyrus	brain
16	chr7:66389400-66405400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr7:66389800-66397400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr7:66390200-66398400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr7:66390600-66397200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr7:66390600-66398200	Weak transcription	Fetal Brain Female	brain
21	chr7:66390600-66403800	Weak transcription	HSMM	muscle
22	chr7:66391200-66398200	Weak transcription	HSMMtube	muscle
23	chr7:66391200-66409800	Weak transcription	Brain Germinal Matrix	brain
24	chr7:66392600-66397400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr7:66392600-66403400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr7:66393000-66399800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:66393000-66402400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr7:66393000-66403600	Weak transcription	HepG2	liver
29	chr7:66393000-66406600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr7:66393200-66398000	Weak transcription	Gastric	stomach
31	chr7:66393400-66411800	Weak transcription	Stomach Mucosa	stomach
32	chr7:66393600-66398000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:66393600-66398000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr7:66393800-66422200	Weak transcription	Fetal Heart	heart
35	chr7:66394000-66399400	Weak transcription	GM12878-XiMat	blood
36	chr7:66394000-66403600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr7:66394200-66398200	Weak transcription	Psoas Muscle	Psoas
38	chr7:66394200-66398400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr7:66394200-66402000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr7:66394200-66403800	Weak transcription	Hela-S3	cervix
41	chr7:66394200-66405400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr7:66394200-66408000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr7:66394400-66398200	Weak transcription	Fetal Thymus	thymus
44	chr7:66394400-66405400	Weak transcription	HMEC	breast
45	chr7:66394400-66405600	Weak transcription	Colonic Mucosa	Colon
46	chr7:66395000-66404000	Weak transcription	NHEK	skin
47	chr7:66395200-66397600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr7:66395400-66404000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr7:66395400-66406800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr7:66395400-66406800	Weak transcription	Stomach Smooth Muscle	stomach

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