Variant report

Variant	rs73143998
Chromosome Location	chr7:66389766-66389767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66385788..66388541-chr7:66389275..66392826,4	MCF-7	breast:
2	chr7:66384799..66388848-chr7:66389441..66396879,12	K562	blood:

Variant related genes	Relation type
ENSG00000106609	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10156059	0.88[EUR][1000 genomes]
rs10224189	0.86[EUR][1000 genomes]
rs10226191	0.86[EUR][1000 genomes]
rs10231411	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10232188	0.86[AFR][1000 genomes]
rs10234322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10234640	0.86[EUR][1000 genomes]
rs10234747	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10235334	0.89[AFR][1000 genomes]
rs10235423	0.84[AFR][1000 genomes]
rs10235638	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10241528	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10242870	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10245017	0.86[EUR][1000 genomes]
rs10247815	0.88[EUR][1000 genomes]
rs10250124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10250831	0.86[AFR][1000 genomes]
rs10258628	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10263993	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10264873	0.89[AFR][1000 genomes]
rs10265069	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10266792	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10267253	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10267834	0.84[EUR][1000 genomes]
rs10278343	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10279240	0.89[AFR][1000 genomes]
rs10280816	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10281090	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10282310	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10282522	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1064795	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12532829	0.91[AFR][1000 genomes]
rs12532843	0.89[AFR][1000 genomes]
rs12533298	0.89[AFR][1000 genomes]
rs12533724	0.89[AFR][1000 genomes]
rs12534188	0.86[AFR][1000 genomes]
rs12536003	0.94[AFR][1000 genomes]
rs13437994	0.86[EUR][1000 genomes]
rs13438432	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1589887	0.84[AFR][1000 genomes]
rs17138017	0.91[AFR][1000 genomes]
rs17680606	0.94[AFR][1000 genomes]
rs17747927	0.87[EUR][1000 genomes]
rs17748115	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2013707	0.81[EUR][1000 genomes]
rs28460006	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28472679	0.88[EUR][1000 genomes]
rs28501161	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs28524571	0.86[AFR][1000 genomes]
rs28560293	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28590087	0.89[AFR][1000 genomes]
rs28641990	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs28675035	0.88[EUR][1000 genomes]
rs3778907	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3778914	0.84[AFR][1000 genomes]
rs3778916	0.89[AFR][1000 genomes]
rs3800818	0.82[EUR][1000 genomes]
rs3823607	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3823609	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4617036	0.86[AFR][1000 genomes]
rs4718417	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57774708	0.87[EUR][1000 genomes]
rs57875851	0.86[EUR][1000 genomes]
rs59693594	0.86[EUR][1000 genomes]
rs60026498	0.87[EUR][1000 genomes]
rs60972148	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62465751	0.97[AFR][1000 genomes]
rs62465753	0.94[AFR][1000 genomes]
rs62466579	0.89[AFR][1000 genomes]
rs62466580	0.84[AFR][1000 genomes]
rs67408913	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6965680	0.81[EUR][1000 genomes]
rs6974601	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71526586	0.84[EUR][1000 genomes]
rs73139941	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73141980	0.86[EUR][1000 genomes]
rs73143921	0.87[EUR][1000 genomes]
rs73145924	0.86[EUR][1000 genomes]
rs73151646	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7455757	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7777631	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7785755	0.84[AFR][1000 genomes]
rs7785883	0.85[EUR][1000 genomes]
rs7796977	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7809359	0.88[EUR][1000 genomes]
rs7809535	0.88[EUR][1000 genomes]
rs868960	0.84[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs73143998	GS1-124K5.12	cis	Skin Sun Exposed Lower leg	GTEx
rs73143998	GS1-124K5.12	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66387400-66395000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:66387400-66395000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:66387600-66390200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:66387600-66390400	Enhancers	Primary T cells fromperipheralblood	blood
5	chr7:66387600-66390400	Weak transcription	HSMMtube	muscle
6	chr7:66387600-66393400	Weak transcription	Fetal Heart	heart
7	chr7:66387600-66394800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:66387600-66394800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:66387600-66394800	Weak transcription	Esophagus	oesophagus
10	chr7:66387600-66395000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:66387600-66395200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:66387600-66395200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:66387600-66407200	Weak transcription	NH-A	brain
14	chr7:66387600-66409800	Weak transcription	Fetal Kidney	kidney
15	chr7:66387600-66428000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:66387800-66390200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:66387800-66390400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr7:66387800-66391200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:66387800-66391800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:66387800-66397200	Weak transcription	Osteobl	bone
21	chr7:66388000-66390400	Weak transcription	HSMM	muscle
22	chr7:66388000-66391600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:66388000-66394600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:66388200-66391400	Genic enhancers	Fetal Muscle Leg	muscle
25	chr7:66388200-66392200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:66388200-66393400	Weak transcription	HMEC	breast
27	chr7:66388200-66395000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:66388200-66406800	Weak transcription	NHLF	lung
29	chr7:66388400-66389800	Weak transcription	Thymus	Thymus
30	chr7:66388400-66390200	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr7:66388400-66390600	Genic enhancers	Primary B cells from peripheral blood	blood
32	chr7:66388400-66390600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr7:66388400-66393400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr7:66388400-66394600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr7:66388400-66401200	Weak transcription	Fetal Lung	lung
36	chr7:66388400-66406800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr7:66388400-66406800	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr7:66388600-66389800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr7:66388600-66390200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr7:66388600-66390200	Strong transcription	Fetal Intestine Small	intestine
41	chr7:66388600-66390200	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr7:66388600-66390600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr7:66388600-66391000	Weak transcription	Psoas Muscle	Psoas
44	chr7:66388600-66391400	Strong transcription	GM12878-XiMat	blood
45	chr7:66388600-66392200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:66388600-66394600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr7:66388600-66395000	Strong transcription	NHEK	skin
48	chr7:66388600-66395400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr7:66388600-66396000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr7:66388600-66398000	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links