Variant report

Variant	rs12533724
Chromosome Location	chr7:66424706-66424707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66421917..66425693-chr7:66427174..66429869,5	K562	blood:
2	chr7:66411722..66413311-chr7:66423675..66425541,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10232188	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10234322	0.89[AFR][1000 genomes]
rs10235334	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10235423	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10235638	0.86[AFR][1000 genomes]
rs10236124	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10237309	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10241528	0.89[AFR][1000 genomes]
rs10247591	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10250124	0.89[AFR][1000 genomes]
rs10250831	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10263993	0.83[AFR][1000 genomes]
rs10264223	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10264873	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10266792	0.80[AFR][1000 genomes]
rs10267922	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10269487	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10270138	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10275343	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10275956	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10279240	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10281794	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10479729	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12531365	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12532805	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12532829	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12532843	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12533298	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12534188	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12534948	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12536003	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12537176	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12537474	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12538038	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12540371	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1589887	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17138017	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17680606	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17748115	0.80[AFR][1000 genomes]
rs2077180	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2091315	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2293350	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28501161	0.80[AFR][1000 genomes]
rs28510688	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28524571	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28590087	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28641990	0.80[AFR][1000 genomes]
rs28729561	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3778914	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3778916	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4382352	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4617036	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4717326	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56743740	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59765110	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61554495	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62465677	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62465679	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62465704	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62465717	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62465731	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62465735	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62465746	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62465749	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62465751	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62465753	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62466579	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62466580	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73140000	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73143914	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73143998	0.89[AFR][1000 genomes]
rs73151646	0.80[AFR][1000 genomes]
rs7777631	0.89[AFR][1000 genomes]
rs7785755	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66387600-66428000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:66400600-66426400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:66403000-66424800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr7:66403400-66426000	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr7:66403400-66426400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:66403600-66425600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr7:66403600-66426400	Strong transcription	Thymus	Thymus
8	chr7:66403600-66426600	Strong transcription	Fetal Stomach	stomach
9	chr7:66403800-66425200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr7:66403800-66425800	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr7:66406000-66426400	Strong transcription	Fetal Thymus	thymus
12	chr7:66406400-66425000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr7:66406600-66425800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:66406600-66425800	Strong transcription	Liver	Liver
15	chr7:66406600-66425800	Strong transcription	Fetal Brain Female	brain
16	chr7:66406600-66426400	Strong transcription	Fetal Muscle Trunk	muscle
17	chr7:66406800-66425200	Strong transcription	Stomach Smooth Muscle	stomach
18	chr7:66406800-66425800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:66406800-66425800	Strong transcription	Adipose Nuclei	Adipose
20	chr7:66406800-66426000	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr7:66406800-66426000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:66408000-66425000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr7:66409400-66425800	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr7:66409800-66425800	Strong transcription	Brain Germinal Matrix	brain
25	chr7:66411400-66425400	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr7:66414000-66425000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr7:66414800-66425200	Strong transcription	Primary T cells from cord blood	blood
28	chr7:66415400-66424800	Strong transcription	GM12878-XiMat	blood
29	chr7:66416400-66424800	Strong transcription	Brain Inferior Temporal Lobe	brain
30	chr7:66417400-66425800	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr7:66417800-66425800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr7:66418000-66425800	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr7:66418000-66425800	Strong transcription	Lung	lung
34	chr7:66418000-66426600	Strong transcription	Spleen	Spleen
35	chr7:66418000-66427000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr7:66418200-66425200	Strong transcription	HSMM	muscle
37	chr7:66418200-66425800	Strong transcription	Placenta	Placenta
38	chr7:66418200-66426400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr7:66418200-66426400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr7:66418200-66426600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr7:66418200-66426800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr7:66418400-66426200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr7:66418400-66426400	Weak transcription	Small Intestine	intestine
44	chr7:66418400-66427200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr7:66418800-66426400	Strong transcription	A549	lung
46	chr7:66419600-66424800	Strong transcription	Primary B cells from peripheral blood	blood
47	chr7:66420400-66425000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr7:66420600-66459200	Weak transcription	Psoas Muscle	Psoas
49	chr7:66421000-66425600	Weak transcription	Aorta	Aorta
50	chr7:66421000-66427200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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