Variant report

Variant	rs10279240
Chromosome Location	chr7:66388698-66388699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:66385651..66388919-chr7:66460114..66462403,3	MCF-7	breast:
2	chr7:66361028..66363688-chr7:66387186..66389228,2	K562	blood:
3	chr7:66384799..66388848-chr7:66389441..66396879,12	K562	blood:

Variant related genes	Relation type
ENSG00000126524	Chromatin interaction
ENSG00000198874	Chromatin interaction
ENSG00000106609	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10232188	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10234322	0.89[AFR][1000 genomes]
rs10235334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10235423	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10235638	0.86[AFR][1000 genomes]
rs10236124	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10237309	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10241528	0.89[AFR][1000 genomes]
rs10247591	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10250124	0.89[AFR][1000 genomes]
rs10250831	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10263993	0.83[AFR][1000 genomes]
rs10264223	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10264873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10266792	0.80[AFR][1000 genomes]
rs10267922	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10269487	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10270138	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10275343	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10275956	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10281794	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10479729	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12531365	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12532805	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12532829	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12532843	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12533298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12533724	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12534188	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12534948	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12536003	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12537176	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12537474	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12538038	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12540371	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1589887	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17138017	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17680606	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17748115	0.80[AFR][1000 genomes]
rs2077180	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2091315	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2293350	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28501161	0.80[AFR][1000 genomes]
rs28510688	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28524571	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28590087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28641990	0.80[AFR][1000 genomes]
rs28729561	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3778914	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3778916	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4382352	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4617036	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4717326	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56743740	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59765110	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61554495	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62465677	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62465679	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62465704	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62465717	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62465731	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62465735	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62465746	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62465749	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465751	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62465753	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62466579	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62466580	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73140000	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73143914	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73143998	0.89[AFR][1000 genomes]
rs73151646	0.80[AFR][1000 genomes]
rs7777631	0.89[AFR][1000 genomes]
rs7785755	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66387200-66388800	Enhancers	Spleen	Spleen
2	chr7:66387400-66389400	Enhancers	Small Intestine	intestine
3	chr7:66387400-66395000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:66387400-66395000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:66387600-66388800	Genic enhancers	Fetal Stomach	stomach
6	chr7:66387600-66389000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:66387600-66389000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:66387600-66389000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr7:66387600-66389000	Enhancers	Fetal Brain Male	brain
10	chr7:66387600-66389000	Enhancers	Pancreas	Pancrea
11	chr7:66387600-66389000	Enhancers	Right Ventricle	heart
12	chr7:66387600-66389200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr7:66387600-66389200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr7:66387600-66389200	Enhancers	Liver	Liver
15	chr7:66387600-66389200	Enhancers	Brain Hippocampus Middle	brain
16	chr7:66387600-66389200	Enhancers	Stomach Mucosa	stomach
17	chr7:66387600-66389400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr7:66387600-66389400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr7:66387600-66389400	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr7:66387600-66390200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr7:66387600-66390400	Enhancers	Primary T cells fromperipheralblood	blood
22	chr7:66387600-66390400	Weak transcription	HSMMtube	muscle
23	chr7:66387600-66393400	Weak transcription	Fetal Heart	heart
24	chr7:66387600-66394800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr7:66387600-66394800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:66387600-66394800	Weak transcription	Esophagus	oesophagus
27	chr7:66387600-66395000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr7:66387600-66395200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr7:66387600-66395200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr7:66387600-66407200	Weak transcription	NH-A	brain
31	chr7:66387600-66409800	Weak transcription	Fetal Kidney	kidney
32	chr7:66387600-66428000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr7:66387800-66388800	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr7:66387800-66389000	Enhancers	Brain Anterior Caudate	brain
35	chr7:66387800-66389000	Enhancers	Fetal Brain Female	brain
36	chr7:66387800-66389200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
37	chr7:66387800-66389200	Genic enhancers	Fetal Thymus	thymus
38	chr7:66387800-66389200	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr7:66387800-66389400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr7:66387800-66389400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:66387800-66389400	Genic enhancers	K562	blood
42	chr7:66387800-66390200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr7:66387800-66390400	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr7:66387800-66391200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr7:66387800-66391800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:66387800-66397200	Weak transcription	Osteobl	bone
47	chr7:66388000-66389000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr7:66388000-66389200	Genic enhancers	Fetal Muscle Trunk	muscle
49	chr7:66388000-66390400	Weak transcription	HSMM	muscle
50	chr7:66388000-66391600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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