Variant report

Variant	rs73147801
Chromosome Location	chr7:79737800-79737801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10227615	0.86[AFR][1000 genomes]
rs10238400	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10239304	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10266086	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275278	0.87[ASN][1000 genomes]
rs12673522	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2714459	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35706262	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4731202	0.86[EUR][1000 genomes]
rs6946088	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6949030	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973146	0.91[ASN][1000 genomes]
rs6978279	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79733200-79741200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr7:79734400-79737800	Enhancers	Dnd41	blood
3	chr7:79735200-79738800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr7:79735200-79741400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:79736400-79738800	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr7:79736600-79742800	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:79736800-79738400	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr7:79737000-79738400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:79737000-79742800	Weak transcription	Brain Substantia Nigra	brain
10	chr7:79737200-79737800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:79737200-79738000	Enhancers	Primary T cells from cord blood	blood
12	chr7:79737200-79741000	Enhancers	Primary hematopoietic stem cells	blood
13	chr7:79737400-79737800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:79737600-79741200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:79737600-79742800	Weak transcription	Brain Angular Gyrus	brain
16	chr7:79737600-79742800	Weak transcription	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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