Variant report

Variant	rs73148222
Chromosome Location	chr3:99269085-99269086
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs73134339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73134347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73134355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73134368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73144632	0.80[EUR][1000 genomes]
rs73144634	0.91[EUR][1000 genomes]
rs73144644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73144645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73144648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73144652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73144655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73144677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73144685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73148209	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73148211	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99265000-99269400	Enhancers	Adipose Nuclei	Adipose
2	chr3:99265400-99269800	Enhancers	HUVEC	blood vessel
3	chr3:99266400-99269800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:99267000-99269600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:99267000-99269800	Enhancers	NHEK	skin
6	chr3:99267000-99270000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:99267200-99269200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:99267200-99269800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:99268600-99269200	Enhancers	Colon Smooth Muscle	Colon
10	chr3:99268600-99269400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:99268600-99269400	Enhancers	Stomach Smooth Muscle	stomach
12	chr3:99268600-99270000	Enhancers	NHDF-Ad	bronchial
13	chr3:99268800-99269400	Enhancers	HMEC	breast
14	chr3:99268800-99269400	Enhancers	Osteobl	bone
15	chr3:99268800-99269600	Enhancers	HSMM	muscle
16	chr3:99268800-99269600	Enhancers	HSMMtube	muscle
17	chr3:99269000-99271800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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