Variant report

Variant	rs73134355
Chromosome Location	chr3:99254123-99254124
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10511175	1.00[ASN][1000 genomes]
rs12486836	1.00[ASN][1000 genomes]
rs12492014	1.00[ASN][1000 genomes]
rs12495115	1.00[ASN][1000 genomes]
rs12495263	1.00[ASN][1000 genomes]
rs1418975	1.00[ASN][1000 genomes]
rs55980409	1.00[ASN][1000 genomes]
rs59765387	1.00[ASN][1000 genomes]
rs61068691	1.00[ASN][1000 genomes]
rs73134339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73144632	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73144634	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73144644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73144645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73144648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73144652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73144655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73144677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73144685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73148209	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148211	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73148262	1.00[ASN][1000 genomes]
rs73148273	1.00[ASN][1000 genomes]
rs73148280	1.00[ASN][1000 genomes]
rs73148292	1.00[ASN][1000 genomes]
rs73148297	1.00[ASN][1000 genomes]
rs7645927	1.00[ASN][1000 genomes]
rs7653590	1.00[ASN][1000 genomes]
rs9849369	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99246200-99254200	Weak transcription	NHLF	lung
2	chr3:99246600-99262000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:99249000-99254200	Weak transcription	Hela-S3	cervix
4	chr3:99249200-99254200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:99249200-99254600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:99249200-99256000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:99251400-99256200	Weak transcription	Aorta	Aorta
8	chr3:99251600-99254400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:99253200-99256000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:99253400-99256400	Enhancers	HSMM	muscle
11	chr3:99253600-99254400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr3:99253600-99255000	Enhancers	Fetal Lung	lung
13	chr3:99253600-99255600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:99253600-99255600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:99253600-99256400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:99253600-99256400	Enhancers	NHEK	skin
17	chr3:99254000-99254200	Enhancers	GM12878-XiMat	blood
18	chr3:99254000-99254400	Weak transcription	Adipose Nuclei	Adipose
19	chr3:99254000-99254600	Enhancers	HUVEC	blood vessel
20	chr3:99254000-99254800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:99254000-99255000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:99254000-99255000	Enhancers	HSMMtube	muscle
23	chr3:99254000-99255000	Enhancers	NH-A	brain
24	chr3:99254000-99255200	Enhancers	HMEC	breast
25	chr3:99254000-99256000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:99254000-99256000	Enhancers	Osteobl	bone
27	chr3:99254000-99256800	Enhancers	NHDF-Ad	bronchial

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