Variant report

Variant	rs7645927
Chromosome Location	chr3:99334554-99334555
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10511175	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107500	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12486836	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12487332	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12492014	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495115	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495263	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12496018	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1418975	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841583	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17777228	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55980409	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59765387	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61068691	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134339	1.00[ASN][1000 genomes]
rs73134347	1.00[ASN][1000 genomes]
rs73134355	1.00[ASN][1000 genomes]
rs73134368	1.00[ASN][1000 genomes]
rs73144632	1.00[ASN][1000 genomes]
rs73144634	1.00[ASN][1000 genomes]
rs73144644	1.00[ASN][1000 genomes]
rs73144645	1.00[ASN][1000 genomes]
rs73144648	1.00[ASN][1000 genomes]
rs73144652	1.00[ASN][1000 genomes]
rs73144655	1.00[ASN][1000 genomes]
rs73144677	1.00[ASN][1000 genomes]
rs73148209	1.00[ASN][1000 genomes]
rs73148211	1.00[ASN][1000 genomes]
rs73148262	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148273	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148280	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148292	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148297	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73150246	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73150248	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7624987	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7653590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9849369	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9942067	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99333600-99345800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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