Variant report

Variant	rs73150248
Chromosome Location	chr3:99365175-99365176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:99363894..99365328-chr3:99405551..99406620,7	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12107500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12486836	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12487332	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12495115	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12495263	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12496018	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418975	0.84[AMR][1000 genomes]
rs16841583	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17777228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73150246	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7624987	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7645927	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7653590	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9849369	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9942067	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99358000-99369400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:99360000-99370200	Weak transcription	Right Atrium	heart
3	chr3:99361200-99366200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:99361200-99366600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:99361600-99366600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:99362000-99365200	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
7	chr3:99362600-99367600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:99362600-99368800	Enhancers	Colon Smooth Muscle	Colon
9	chr3:99362800-99369200	Enhancers	NHLF	lung
10	chr3:99363000-99365600	Genic enhancers	Osteobl	bone
11	chr3:99363200-99367400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:99363600-99365400	Enhancers	Fetal Stomach	stomach
13	chr3:99363800-99365400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:99363800-99365600	Enhancers	Stomach Smooth Muscle	stomach
15	chr3:99363800-99366600	Enhancers	NH-A	brain
16	chr3:99363800-99367800	Enhancers	HMEC	breast
17	chr3:99363800-99369000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:99364000-99365200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr3:99364000-99365200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:99364000-99365400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:99364000-99367000	Enhancers	NHDF-Ad	bronchial
22	chr3:99364000-99370200	Weak transcription	Ovary	ovary
23	chr3:99364200-99366000	Flanking Active TSS	NHEK	skin
24	chr3:99364400-99365800	Enhancers	Adipose Nuclei	Adipose
25	chr3:99364400-99366800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:99364400-99367000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:99364400-99367400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:99364400-99370000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr3:99364600-99365200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:99364600-99365400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:99364600-99365400	Enhancers	HSMMtube	muscle
32	chr3:99364800-99365200	Enhancers	H1 Cell Line	embryonic stem cell
33	chr3:99364800-99365200	Flanking Active TSS	HSMM	muscle
34	chr3:99364800-99365400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr3:99364800-99367000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:99364800-99368600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr3:99365000-99365200	Active TSS	Aorta	Aorta
38	chr3:99365000-99365400	Genic enhancers	HUVEC	blood vessel
39	chr3:99365000-99365600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:99365000-99366000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr3:99365000-99366600	Weak transcription	Brain Germinal Matrix	brain
42	chr3:99365000-99366600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr3:99365000-99367000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr3:99365000-99367000	Weak transcription	Fetal Muscle Leg	muscle
45	chr3:99365000-99370200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr3:99365000-99370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:99365000-99370400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr3:99365000-99371600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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